RetrogeneDB ID: | retro_ocun_1125 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 2:160768864..160769220(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL26 | ||
Ensembl ID: | ENSOCUG00000006538 | ||
Aliases: | None | ||
Description: | ribosomal protein L26 [Source:HGNC Symbol;Acc:10327] |
Percent Identity: | 52.5 % |
Parental protein coverage: | 82.07 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | SHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYR-KKYVIYIERVQREKAN |
SHI...IMS.PL....RQK......PI.K..E.Q.V.GHYKGQQ....VQVYR..KYV.....VQ..KA. | |
Retrocopy | SHIQATIMSPPLYQKHRQKLTGQFIPIQKEGEMQAVQGHYKGQQTCEAVQVYR<RKYVF*VQQVQ*GKAR |
Parental | GTTVHVGIHPSKVVITRLKLDKDRKKILERKAKSRQVGKEKGKYKEETIE |
GT..HVGIHPS....TRLKLD.D..K.LE....S.Q...EK.KY..E..E | |
Retrocopy | GTAIHVGIHPSTEAVTRLKLDEDHQKTLESITTSCQARNEKTKYEKEATE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 121 .58 RPM |
SRP017611_kidney | 0 .00 RPM | 294 .24 RPM |
SRP017611_liver | 0 .00 RPM | 44 .86 RPM |