RetrogeneDB ID: | retro_ogar_3263 | ||
Retrocopylocation | Organism: | Bushbaby (Otolemur garnettii) | |
Coordinates: | GL873758.1:110186..110663(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CASP3 | ||
Ensembl ID: | ENSOGAG00000005985 | ||
Aliases: | None | ||
Description: | caspase 3, apoptosis-related cysteine peptidase [Source:HGNC Symbol;Acc:1504] |
Percent Identity: | 85.09 % |
Parental protein coverage: | 57.4 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | LSHGEEGIIFGT-NGPVDLKKITSFFRGDYCRSLTGKPKLFIIQACRGTELDCGIETDSGTEDDMACQKI |
LS.GEEGII.GT.NGPVDLKKITSFFRGD.CRSLT.KPKLFIIQAC.GTELDCGIETDSG.EDDMACQKI | |
Retrocopy | LSYGEEGIIWGT<NGPVDLKKITSFFRGDDCRSLTRKPKLFIIQAC*GTELDCGIETDSGAEDDMACQKI |
Parental | PVEADFLYAYSTAPGYYSWRNSKDGSWFI-QSLCAMLKLYAHKLEFMHILTRVNRKVATEFESFSFDSTF |
..EADFLYA.ST.PGYYSWRNSK..SW...QSLC.MLK.YAHKL.FMHILT.VN.K.ATEF.SFSFDSTF | |
Retrocopy | LMEADFLYANSTQPGYYSWRNSKNSSWMV>QSLCTMLKPYAHKLKFMHILTQVNPKAATEFKSFSFDSTF |
Parental | HAKKQIPCIVSMLTKDLYFYH |
HAKKQIPCIVS.LTKDLYFYH | |
Retrocopy | HAKKQIPCIVSILTKDLYFYH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000012511 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000013931 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000004809 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000012053 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000005985 | 2 retrocopies |
retro_ogar_1756, retro_ogar_3263 ,
|
Rattus norvegicus | ENSRNOG00000010475 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000009178 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000003865 | 2 retrocopies |