RetrogeneDB ID: | retro_ogar_3320 | ||
Retrocopylocation | Organism: | Bushbaby (Otolemur garnettii) | |
Coordinates: | GL873777.1:224609..225031(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PCNP | ||
Ensembl ID: | ENSOGAG00000001821 | ||
Aliases: | None | ||
Description: | PEST proteolytic signal containing nuclear protein [Source:HGNC Symbol;Acc:30023] |
Percent Identity: | 60.69 % |
Parental protein coverage: | 80.9 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | RAGAAGGPEEEAEKPVKTKTVSSSNG-GESTSRSAEKRSAEEEAADLPTKPTKISKFGFAIGSQMTKKAS |
R.G...G...EA.K.V.......SNG.G...S.SAEKRS.EEEA....TKP..I..FGFA.G...TKKAS | |
Retrocopy | RQGGGEGHTGEA*KAVASQS-HQSNG<GGNSSHSAEKRSTEEEATGISTKPINITWFGFAPGHHTTKKAS |
Parental | AISIKLGSSKPKETVPTLAPKTLSVAAAFNEDEDSEPEEMPPEAKMRMKNIGRDTPTSAGPNSFNKGKHG |
..S.K...S.PKET.PTL.PK.LSVA.AFNEDEDSE.EEMPPEAKM.MK..G.DTPTSAGP..F...KH. | |
Retrocopy | SLSTKRAPSNPKETAPTLVPKALSVAVAFNEDEDSEAEEMPPEAKMKMKTMGKDTPTSAGPDFFK--KHR |
Parental | FSDNQ |
FSD.Q | |
Retrocopy | FSDSQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000007972 | 11 retrocopies | |
Callithrix jacchus | ENSCJAG00000000508 | 6 retrocopies | |
Cavia porcellus | ENSCPOG00000010610 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000008873 | 5 retrocopies | |
Gorilla gorilla | ENSGGOG00000025423 | 4 retrocopies | |
Loxodonta africana | ENSLAFG00000005518 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000017782 | 3 retrocopies | |
Mustela putorius furo | ENSMPUG00000011696 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000001821 | 4 retrocopies | |
Procavia capensis | ENSPCAG00000007007 | 3 retrocopies |