RetrogeneDB ID: | retro_dnov_370 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | GeneScaffold_4154:35114..35456(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PCNP | ||
Ensembl ID: | ENSDNOG00000008873 | ||
Aliases: | None | ||
Description: | PEST proteolytic signal containing nuclear protein [Source:HGNC Symbol;Acc:30023] |
Percent Identity: | 74.14 % |
Parental protein coverage: | 65.17 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | SNGGESSSRSAEKRSAEEEAGDLPTKPTKISKFGFAIGSQTTKKASAISIKLGSSKPKETVPTLAPKTLS |
..GGE.S.RSAE.RSAEE.AGDLP.KP.K.S.FGFA..SQT.K.ASA.SIKLG.S..KE.V.TLAPKTLS | |
Retrocopy | TSGGERSRRSAETRSAEE-AGDLPAKPAKTSTFGFAVQSQT-KQASAKSIKLGPSELKEAVLTLAPKTLS |
Parental | VAAAFNEDEDSEPEEMPPEAKMRMKNIGRDTPTSAGPNSFNKGKHG |
VAA.FNE.E.SEPE.MP.EAKMRMK.IGRD.PTSA.PN.F.KGKHG | |
Retrocopy | VAAVFNESEQSEPEDMPLEAKMRMKSIGRDSPTSARPNPFEKGKHG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 41 .03 RPM |
SRP012922_cerebellum | 0 .00 RPM | 54 .16 RPM |
SRP012922_heart | 0 .00 RPM | 20 .65 RPM |
SRP012922_kidney | 2 .19 RPM | 29 .84 RPM |
SRP012922_liver | 0 .93 RPM | 22 .14 RPM |
SRP012922_lung | 0 .00 RPM | 56 .20 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 36 .35 RPM |
SRP012922_spleen | 0 .00 RPM | 58 .83 RPM |