RetrogeneDB ID:

retro_ogar_652

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873525.1:20782637..20782965(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:PCNP
Ensembl ID:ENSOGAG00000001821
Aliases:None
Description:PEST proteolytic signal containing nuclear protein [Source:HGNC Symbol;Acc:30023]


Retrocopy-Parental alignment summary:






>retro_ogar_652
AGTGGAGGAGGAGAAAGTGCCAGTCATAGTGTTGAAAAGAGATCAGCTGAAGAAGAAGCTGCAGACCTCCCAACAAATCC
TCCAAAGATCTCCAAGTTTGTATTTGCCTCTATTCAGATGACCAAGAAAGCATTGGCTATATCCATGCTTGGATCAAGTA
AGCCTCAAGAAACTGTTCCAATCTTGTTCCAAAAATGCTTTCAATAGCAGCAGCTTTTAAGATGAAGATAGTAAGCCAGA
AGAAATGCCTCCAGAAGCAAAGATGAGAATGAAGAATATTGGAAGGGATACACCAACATCATTTGGGCCAAACTCCTTCA
ATAAAGGA

ORF - retro_ogar_652 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 73.91 %
Parental protein coverage: 63.48 %
Number of stop codons detected: 0
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalSNGGESTSRSAEKRSAEEEAADLPTKPTKISKFGFAIGSQMTKKASAISIKLGSSKPKETVP-TLAPKTL
S.GGES.S.S.EKRSAEEEAADLPT.P.KISKF.FA...QMTKKA.AIS..LGSSKP.ETVP..L.PK.L
RetrocopySGGGESASHSVEKRSAEEEAADLPTNPPKISKFVFA-SIQMTKKALAISM-LGSSKPQETVP<NLVPKML
ParentalSVAAAFN-EDEDSEPEEMPPEAKMRMKNIGRDTPTSAGPNSFNKG
S.AAAF.........E.MPPEAKMRMKNIGRDTPTS.GPNSFNKG
RetrocopySIAAAFK<DEDSKPEE-MPPEAKMRMKNIGRDTPTSFGPNSFNKG

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_652 was not experimentally validated.

Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 10 parental genes, and 41 retrocopies.

Species Parental gene accession Retrocopies number
Choloepus hoffmanni ENSCHOG0000000797211 retrocopies
Callithrix jacchus ENSCJAG000000005086 retrocopies
Cavia porcellus ENSCPOG000000106102 retrocopies
Dasypus novemcinctus ENSDNOG000000088735 retrocopies
Gorilla gorilla ENSGGOG000000254234 retrocopies
Loxodonta africana ENSLAFG000000055182 retrocopies
Macaca mulatta ENSMMUG000000177823 retrocopies
Mustela putorius furoENSMPUG000000116961 retrocopy
Otolemur garnettii ENSOGAG00000001821 4 retrocopies
Procavia capensis ENSPCAG000000070073 retrocopies



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