Parental gene:

ENSCJAG00000000508

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:15:95138981..95160729(-)


>ENSCJAG00000000508
ATGGCGGACGGGAAGGCGGGAGAGGAGAAGCCCGAAAAGTCGCAGCGAGCTGGAGCCGCCGGAGGACCTGAAGAAGAAGC
AGAAAAACCTGTGAAAACTAAGACTGTTTCTTCCAGTAATGGAGGGGAAAGTTCCAGTCGCAGCGCTGAGAAGCGATCAG
CTGAAGAAGAAGCTGCAGACCTCCCAACAAAACCTACAAAGATCTCCAAGTTTGGATTTGCCATAGGTAGTCAGACGACA
AAGAAAGCATCAGCCATATCCATCAAACTTGGATCAAGTAAGCCTAAAGAAACTGTTCCAACTCTTGCTCCTAAAACACT
TTCAGTAGCAGCAGCTTTTAATGAAGATGAAGATAGTGAACCAGAAGAAATGCCTCCAGAAGCAAAGATGAGGATGAAGA
ATATTGGAAGGGATACACCAACATCAGCTGGACCAAACTCTTTCAATAAAGGAAAGCATGGGTTTTCTGATAACCAGAAG
CTATGGGAGCGAAATATAAAATCTCATCTTGGAAATGTCCATGACCAAGACAATTAA

Library Parental gene expression (RPM)
SRP051959_colon 9 .76 RPM
SRP051959_heart 15 .54 RPM
SRP051959_kidney 15 .46 RPM
SRP051959_liver 14 .21 RPM
SRP051959_lung 20 .50 RPM
SRP051959_lymph_node 16 .99 RPM
SRP051959_skeletal_muscle 14 .26 RPM
SRP051959_spleen 17 .04 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000003777 possible_ortholog 2 retrogenes
retro_amel_1086, retro_amel_1679,
Canis familiaris ENSCAFG00000009593 possible_ortholog 3 retrogenes
retro_cfam_1850, retro_cfam_2074, retro_cfam_2160,
Choloepus hoffmanni ENSCHOG00000007972 ortholog_one2many 11 retrogenes
retro_chof_1170, retro_chof_1215, retro_chof_2070, retro_chof_2280, retro_chof_2290, retro_chof_2553, retro_chof_2575, retro_chof_594, retro_chof_651, retro_chof_806, retro_chof_819,
Cavia porcellus ENSCPOG00000010610 ortholog_one2many 2 retrogenes
retro_cpor_1335, retro_cpor_443,
Dasypus novemcinctus ENSDNOG00000008873 ortholog_one2many 5 retrogenes
retro_dnov_1606, retro_dnov_259, retro_dnov_370, retro_dnov_910, retro_dnov_98,
Felis catus ENSFCAG00000029026 possible_ortholog 2 retrogenes
retro_fcat_1767, retro_fcat_1822,
Homo sapiens ENSG00000081154 possible_ortholog 3 retrogenes
retro_hsap_1130, retro_hsap_1155, retro_hsap_1264,
Gorilla gorilla ENSGGOG00000025423 possible_ortholog 4 retrogenes
retro_ggor_882, retro_ggor_901, retro_ggor_902, retro_ggor_994,
Loxodonta africana ENSLAFG00000005518 ortholog_one2many 2 retrogenes
retro_lafr_1189, retro_lafr_458,
Microcebus murinus ENSMICG00000008072 possible_ortholog 10 retrogenes
retro_mmur_1010, retro_mmur_1138, retro_mmur_1286, retro_mmur_148, retro_mmur_1535, retro_mmur_1547, retro_mmur_1625, retro_mmur_167, retro_mmur_458, retro_mmur_887,
Myotis lucifugus ENSMLUG00000005878 possible_ortholog 5 retrogenes
retro_mluc_1010, retro_mluc_1818, retro_mluc_2423, retro_mluc_603, retro_mluc_816,
Macaca mulatta ENSMMUG00000017782 possible_ortholog 3 retrogenes
retro_mmul_1312, retro_mmul_1377, retro_mmul_2598,
Mustela putorius furo ENSMPUG00000011696 possible_ortholog 1 retrogene
retro_mputfur_850,
Mus musculus ENSMUSG00000071533 possible_ortholog 4 retrogenes
retro_mmus_2331, retro_mmus_2339, retro_mmus_2822, retro_mmus_3034,
Nomascus leucogenys ENSNLEG00000003224 possible_ortholog 2 retrogenes
retro_nleu_2100, retro_nleu_2971,
Oryctolagus cuniculus ENSOCUG00000011110 possible_ortholog 7 retrogenes
retro_ocun_1072, retro_ocun_1144, retro_ocun_1496, retro_ocun_1537, retro_ocun_573, retro_ocun_687, retro_ocun_868,
Otolemur garnettii ENSOGAG00000001821 ortholog_one2many 4 retrogenes
retro_ogar_2216, retro_ogar_2465, retro_ogar_3320, retro_ogar_652,
Procavia capensis ENSPCAG00000007007 ortholog_one2many 3 retrogenes
retro_pcap_161, retro_pcap_194, retro_pcap_273,
Pongo abelii ENSPPYG00000013591 possible_ortholog 5 retrogenes
retro_pabe_1051, retro_pabe_1598, retro_pabe_3778, retro_pabe_935, retro_pabe_961,
Pan troglodytes ENSPTRG00000015172 possible_ortholog 3 retrogenes
retro_ptro_676, retro_ptro_790, retro_ptro_864,
Pteropus vampyrus ENSPVAG00000009886 possible_ortholog 2 retrogenes
retro_pvam_1277, retro_pvam_421,
Rattus norvegicus ENSRNOG00000028411 possible_ortholog 1 retrogene
retro_rnor_2138,
Sorex araneus ENSSARG00000001433 possible_ortholog 2 retrogenes
retro_sara_265, retro_sara_626,
Sus scrofa ENSSSCG00000011955 possible_ortholog 5 retrogenes
retro_sscr_1030, retro_sscr_1124, retro_sscr_451, retro_sscr_696, retro_sscr_728,
Tursiops truncatus ENSTTRG00000015008 possible_ortholog 1 retrogene
retro_ttru_1167,
Vicugna pacos ENSVPAG00000012239 possible_ortholog 1 retrogene
retro_vpac_564,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_101 76.40 100.00
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2. retro_cjac_401 82.98 78.09
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3. retro_cjac_1569 90.00 78.65
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4. retro_cjac_1722 84.31 84.83
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5. retro_cjac_3205 86.67 100.00
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6. retro_cjac_3332 78.89 100.00
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Download FASTA sequences of all ENSCJAG00000000508 retrocopies