RetrogeneDB ID:

retro_mputfur_850

Retrocopy
location
Organism:Ferret (Mustela putorius furo)
Coordinates:GL896957.1:6029441..6029970(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSMPUG00000011696
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_mputfur_850
ATGGTGGACAGGAAGGAGGGAGAGGAGAAGCCCGAGAAACCACAGCGAGCTGGAGCCGCTGGAGAACCTGAAGAAGAAGT
AGAAAAAACTGTCAAAATTAAGACTATTTCTTTCAGTCATGGAGGGGAAAGTTCCAGTCACAGCGCTGAGATGCAATCAG
CTGAAGAAGCAGCTGTGGGCCTCCCAACAAAACCTACAAAGATCTCCAAGTTGGGATTTGCCATAGGTAGACGACAAAGC
AAACCTCAGCCATATCCATCAAACTTGGATCAAGGAAGCCTAAAAAACTGTTCCAACGCTTGCTCCAAAAAACGTTTCAG
TTGCAGCAGCTTTTAATGAAGATGAAGCTAGTGAGCCAGAGGAAATGTCTCCAGAAGCAAAGATAAGGATGACAAATATT
GGAAGGGATACACCCACGTCAGCAGCACCAAACTCCTTCAGTAAAGGAAAGCAGGATTTTCCTGATAACCGGAAGCTCTG
AGGGCAAAATATAAAATCTCGCCTTGAAAATGTCCATGACCAAGACAAT

ORF - retro_mputfur_850 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 71.11 %
Parental protein coverage: 100. %
Number of stop codons detected: 2
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalMADGKAGEEKPEKPQRAGAAGGPEEEAEKPVKTKTVSSSNGGESSSRSAEKRSAEEEAADL-PTKPTKIS
M.D.K.GEEKPEKPQRAGAAG.PEEE.EK.VK.KT.S.S.GGESSS.SAE..SAEE.A..L.P.K..K..
RetrocopyMVDRKEGEEKPEKPQRAGAAGEPEEEVEKTVKIKTISFSHGGESSSHSAEMQSAEEAAVGL<PNKTYKDL
ParentalKFGFAIGSQTTKKASAISIKLGSSKPKE-TVPTLAPKTLSVAAAFNEDEDSEPEEMPPEAKMRMKNIGRD
..G......TTK..SAISIKLGS.KPK..TVPTLAPK..SVAAAFNEDE.SEPEEM.PEAK.RM.NIGRD
RetrocopyQVGIC-HR*TTKQTSAISIKLGSRKPKK<TVPTLAPKNVSVAAAFNEDEASEPEEMSPEAKIRMTNIGRD
ParentalTPTSAGPNSFNKGKHGFSDNQKLWERNIKSHLGNVHDQDN
TPTSA.PNSF.KGK..F.DN.KL...NIKS.L.NVHDQDN
RetrocopyTPTSAAPNSFSKGKQDFPDNRKL*GQNIKSRLENVHDQDN

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Mustela putorius furo was not studied using RNA-Seq expression data.
Mustela putorius furo was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mputfur_850 retrocopy.
Mustela putorius furo was not studied using FANTOM5 data.
retro_mputfur_850 was not experimentally validated.

Retrocopy orthology:
Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 27 parental genes, and 99 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000037772 retrocopies
Canis familiaris ENSCAFG000000095933 retrocopies
Choloepus hoffmanni ENSCHOG0000000797211 retrocopies
Callithrix jacchus ENSCJAG000000005086 retrocopies
Cavia porcellus ENSCPOG000000106102 retrocopies
Dasypus novemcinctus ENSDNOG000000088735 retrocopies
Felis catus ENSFCAG000000290262 retrocopies
Homo sapiens ENSG000000811543 retrocopies
Gorilla gorilla ENSGGOG000000254234 retrocopies
Loxodonta africana ENSLAFG000000055182 retrocopies
Microcebus murinus ENSMICG0000000807210 retrocopies
Myotis lucifugus ENSMLUG000000058785 retrocopies
Macaca mulatta ENSMMUG000000177823 retrocopies
Mustela putorius furoENSMPUG00000011696 1 retrocopy
retro_mputfur_850 ,
Mus musculus ENSMUSG000000715334 retrocopies
Nomascus leucogenys ENSNLEG000000032242 retrocopies
Oryctolagus cuniculus ENSOCUG000000111107 retrocopies
Otolemur garnettii ENSOGAG000000018214 retrocopies
Procavia capensis ENSPCAG000000070073 retrocopies
Pongo abelii ENSPPYG000000135915 retrocopies
Pan troglodytes ENSPTRG000000151723 retrocopies
Pteropus vampyrus ENSPVAG000000098862 retrocopies
Rattus norvegicus ENSRNOG000000284111 retrocopy
Sorex araneus ENSSARG000000014332 retrocopies
Sus scrofa ENSSSCG000000119555 retrocopies
Tursiops truncatus ENSTTRG000000150081 retrocopy
Vicugna pacos ENSVPAG000000122391 retrocopy



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