Parental gene: | PCNP, ENSDNOG00000008873 |
| Aliases: | None |
| Description: | PEST proteolytic signal containing nuclear protein [Source:HGNC Symbol;Acc:30023] |
| Organism: | Armadillo (Dasypus novemcinctus) |
| Coordinates: | GeneScaffold_767:5141..157938(+) |
>ENSDNOG00000008873
ATGGCGGACCGGAAGGCGGGAGAGGAGAACTCGGAGAAGCCGCAACGAGCTGGAACCGTCGGAGGACCTGAAGAAGAAGC
AGAAAAACCTGTGAAAACTAAGACTGTTTCTTCCAGTAATGGAGGGGAAAGTTCCAGTCGCAGCGCTGAGAAGCGATCAG
CTGAAGAAGAAGCTGGTGACCTCCCAACAAAACCTACAAAGATCTCCAAGTTTGGATTTGCTATAGGTAGTCAGACAACA
AAGAAAGCATCAGCCATATCCATCAAACTTGGATCAAGTAAGCCTAAAGAAACTGTTCCAACTCTTGCTCCAAAAACCCT
TTCAGTAGCAGCAGCTTTTAATGAAGATGAAGATAGTGAGCCAGAGGAAATGCCCCCCGAAGCAAAGATGAGGATGAAGA
ATATTGGAAGGGATACACCAACATCAGCAGGACCAAACTCCTTCAACAAAGGAAAGCATGGGTTTTCTGATAACCAGAAG
CTATGGGAGCGAAATATAAAATCTCATCTTGGAAATGTCCATGACCAAGACAATTAA
ATGGCGGACCGGAAGGCGGGAGAGGAGAACTCGGAGAAGCCGCAACGAGCTGGAACCGTCGGAGGACCTGAAGAAGAAGC
AGAAAAACCTGTGAAAACTAAGACTGTTTCTTCCAGTAATGGAGGGGAAAGTTCCAGTCGCAGCGCTGAGAAGCGATCAG
CTGAAGAAGAAGCTGGTGACCTCCCAACAAAACCTACAAAGATCTCCAAGTTTGGATTTGCTATAGGTAGTCAGACAACA
AAGAAAGCATCAGCCATATCCATCAAACTTGGATCAAGTAAGCCTAAAGAAACTGTTCCAACTCTTGCTCCAAAAACCCT
TTCAGTAGCAGCAGCTTTTAATGAAGATGAAGATAGTGAGCCAGAGGAAATGCCCCCCGAAGCAAAGATGAGGATGAAGA
ATATTGGAAGGGATACACCAACATCAGCAGGACCAAACTCCTTCAACAAAGGAAAGCATGGGTTTTCTGATAACCAGAAG
CTATGGGAGCGAAATATAAAATCTCATCTTGGAAATGTCCATGACCAAGACAATTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP012922_ascending_colon | 41 .03 RPM |
| SRP012922_cerebellum | 54 .16 RPM |
| SRP012922_heart | 20 .65 RPM |
| SRP012922_kidney | 29 .84 RPM |
| SRP012922_liver | 22 .14 RPM |
| SRP012922_lung | 56 .20 RPM |
| SRP012922_quadricep_muscle | 36 .35 RPM |
| SRP012922_spleen | 58 .83 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000003777 | ortholog_one2one | 2 retrogenes | |
| Canis familiaris | ENSCAFG00000009593 | ortholog_one2one | 3 retrogenes | |
| Choloepus hoffmanni | ENSCHOG00000007972 | ortholog_one2one | 11 retrogenes | |
| Callithrix jacchus | ENSCJAG00000000508 | ortholog_one2many | 6 retrogenes | |
| Cavia porcellus | ENSCPOG00000010610 | ortholog_one2one | 2 retrogenes | |
| Felis catus | ENSFCAG00000029026 | ortholog_one2one | 2 retrogenes | |
| Homo sapiens | ENSG00000081154 | ortholog_one2one | 3 retrogenes | |
| Gorilla gorilla | ENSGGOG00000025423 | ortholog_one2many | 4 retrogenes | |
| Loxodonta africana | ENSLAFG00000005518 | ortholog_one2one | 2 retrogenes | |
| Microcebus murinus | ENSMICG00000008072 | ortholog_one2one | 10 retrogenes | |
| Myotis lucifugus | ENSMLUG00000005878 | ortholog_one2one | 5 retrogenes | |
| Macaca mulatta | ENSMMUG00000017782 | ortholog_one2many | 3 retrogenes | |
| Mustela putorius furo | ENSMPUG00000011696 | ortholog_one2many | 1 retrogene | |
| Mus musculus | ENSMUSG00000071533 | ortholog_one2one | 4 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000003224 | ortholog_one2one | 2 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000011110 | ortholog_one2many | 7 retrogenes | |
| Otolemur garnettii | ENSOGAG00000001821 | ortholog_one2one | 4 retrogenes | |
| Procavia capensis | ENSPCAG00000007007 | ortholog_one2one | 3 retrogenes | |
| Pongo abelii | ENSPPYG00000013591 | ortholog_one2one | 5 retrogenes | |
| Pan troglodytes | ENSPTRG00000015172 | ortholog_one2one | 3 retrogenes | |
| Pteropus vampyrus | ENSPVAG00000009886 | ortholog_one2one | 2 retrogenes | |
| Rattus norvegicus | ENSRNOG00000028411 | ortholog_one2one | 1 retrogene | |
| Sorex araneus | ENSSARG00000001433 | ortholog_one2one | 2 retrogenes | |
| Sus scrofa | ENSSSCG00000011955 | ortholog_one2one | 5 retrogenes | |
| Tursiops truncatus | ENSTTRG00000015008 | ortholog_one2one | 1 retrogene | |
| Vicugna pacos | ENSVPAG00000012239 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_dnov_98 | 68.02 | 96.07 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_dnov_259 | 78.00 | 56.18 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_dnov_370 | 74.14 | 65.17 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_dnov_910 | 86.67 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_dnov_1606 | 82.11 | 67.98 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSDNOG00000008873 retrocopies