RetrogeneDB ID: | retro_pabe_131 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 8:55896866..55897331(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSPPYG00000018592 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CHCHD2 | ||
Ensembl ID: | ENSPPYG00000017543 | ||
Aliases: | None | ||
Description: | coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:HGNC Symbol;Acc:21645] |
Percent Identity: | 83.22 % |
Parental protein coverage: | 98.01 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MPRGSRSRTSRMAPPASRAPQMRAAPRPAPVAQPPAAAPPSAVGSSAAAPWQPGLMAQMATTAAGVAVGS |
MPRGSRS.TS..APP.SRA.QMRA.PRPAP.AQPPA.APPSAVGS.A.AP.QP.LMAQMATTAAGVAVGS | |
Retrocopy | MPRGSRSHTSCRAPPTSRATQMRATPRPAPAAQPPAVAPPSAVGSPAPAPQQPSLMAQMATTAAGVAVGS |
Parental | AVGHTLGHAITGGFSGGSNAEPARPDITYQEPQGTQPSQQQQPCFYEIKQFLECAQNQGDI-KLCEGFSE |
AVGHTLG.A.TG.FSGGSN.EPA.PDITYQ.PQGT.P.QQQQPCF.EIKQFLECAQNQGDI.KLC..F.E | |
Retrocopy | AVGHTLGYALTGSFSGGSNGEPAKPDITYQQPQGTWPAQQQQPCFHEIKQFLECAQNQGDINKLCGVFNE |
Parental | VLKQCRLAN |
VLKQCRLAN | |
Retrocopy | VLKQCRLAN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 52 .53 RPM |
SRP007412_cerebellum | 0 .00 RPM | 57 .03 RPM |
SRP007412_heart | 0 .00 RPM | 51 .75 RPM |
SRP007412_kidney | 0 .03 RPM | 69 .41 RPM |
SRP007412_liver | 0 .00 RPM | 54 .99 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4057 |
Pan troglodytes | retro_ptro_2750 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000016050 | 2 retrocopies | |
Bos taurus | ENSBTAG00000040295 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000010178 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000021267 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000012857 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000008598 | 1 retrocopy | |
Homo sapiens | ENSG00000106153 | 8 retrocopies | |
Gorilla gorilla | ENSGGOG00000014938 | 8 retrocopies | |
Myotis lucifugus | ENSMLUG00000015151 | 1 retrocopy | |
Mus musculus | ENSMUSG00000070493 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000015819 | 6 retrocopies | |
Otolemur garnettii | ENSOGAG00000010097 | 5 retrocopies | |
Pongo abelii | ENSPPYG00000017543 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000019209 | 9 retrocopies | |
Sus scrofa | ENSSSCG00000007743 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000010512 | 3 retrocopies | |
Tupaia belangeri | ENSTBEG00000012905 | 15 retrocopies | |
Tursiops truncatus | ENSTTRG00000015185 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000006104 | 1 retrocopy |