Parental gene:

CHCHD2, ENSPTRG00000019209

Aliases:None
Description:None
Organism:Chimpanzee (Pan troglodytes)
Coordinates:7:54759799..54764703(-)


>ENSPTRG00000019209
ATGCCGCGTGGAAGCCGAAGCCGCACCTCCCGCATGGCCCCTCCGGCCAGCCGGGCCCCTCAGATGAGAGCTGCACCCAG
GCCAGCACCAGTCGCTCAGCCACCAGCAGCGGCACCCCCATCTGCAGTTGGCTCTTCTGCTGCTGCGCCCCGGCAGCCAG
GTCTGATGGCCCAGATGGCAACCACTGCAGCTGGCGTGGCTGTGGGCTCTGCTGTGGGGCACACACTGGGTCACGCCATT
ACTGGGGGCTTCAGTGGAGGAAGTAATGCTGAGCCTGCGAGGCCTGACATCACTTACCAGGAGCCTCAGGGAACCCAGCC
AGCACAGCAGCAGCAGCCTTGCCTCTATGAGATCAAACAGTTTCTGGAGTGTGCCCAGAACCAGGGTGACATCAAGCTCT
GTGAGGGTTTCAATGAGGTGCTGAAACAGTGCCGACTTGCAAACGGATTGGCCTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 100 .08 RPM
SRP007412_cerebellum 30 .61 RPM
SRP007412_heart 43 .69 RPM
SRP007412_kidney 112 .16 RPM
SRP007412_liver 46 .25 RPM
SRP007412_testis 8 .33 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000016050 ortholog_one2one 2 retrogenes
retro_amel_500, retro_amel_976,
Bos taurus ENSBTAG00000040295 ortholog_one2one 2 retrogenes
retro_btau_397, retro_btau_768,
Canis familiaris ENSCAFG00000010178 ortholog_one2one 1 retrogene
retro_cfam_1653,
Callithrix jacchus ENSCJAG00000021267 ortholog_one2many 1 retrogene
retro_cjac_271,
Erinaceus europaeus ENSEEUG00000012857 ortholog_one2many 1 retrogene
retro_eeur_398,
Echinops telfairi ENSETEG00000008598 ortholog_one2many 1 retrogene
retro_etel_45,
Homo sapiens ENSG00000106153 ortholog_one2one 8 retrogenes
retro_hsap_116, retro_hsap_1180, retro_hsap_1995, retro_hsap_3063, retro_hsap_3186, retro_hsap_4057, retro_hsap_4184, retro_hsap_4752,
Gorilla gorilla ENSGGOG00000014938 ortholog_one2one 8 retrogenes
retro_ggor_2103, retro_ggor_220, retro_ggor_2725, retro_ggor_2807, retro_ggor_2808, retro_ggor_2958, retro_ggor_918, retro_ggor_989,
Myotis lucifugus ENSMLUG00000015151 ortholog_one2many 1 retrogene
retro_mluc_345,
Mus musculus ENSMUSG00000070493 ortholog_one2one 2 retrogenes
retro_mmus_2340, retro_mmus_2536,
Nomascus leucogenys ENSNLEG00000015819 ortholog_one2one 6 retrogenes
retro_nleu_1250, retro_nleu_1657, retro_nleu_2096, retro_nleu_2108, retro_nleu_555, retro_nleu_770,
Otolemur garnettii ENSOGAG00000010097 ortholog_one2many 5 retrogenes
retro_ogar_1161, retro_ogar_158, retro_ogar_1848, retro_ogar_2837, retro_ogar_34,
Pongo abelii ENSPPYG00000017543 ortholog_one2one 4 retrogenes
retro_pabe_131, retro_pabe_139, retro_pabe_1755, retro_pabe_496,
Sus scrofa ENSSSCG00000007743 ortholog_one2one 1 retrogene
retro_sscr_515,
Ictidomys tridecemlineatus ENSSTOG00000010512 ortholog_one2many 3 retrogenes
retro_itri_1870, retro_itri_670, retro_itri_671,
Tupaia belangeri ENSTBEG00000012905 ortholog_one2one 15 retrogenes
retro_tbel_1728, retro_tbel_1891, retro_tbel_2513, retro_tbel_2593, retro_tbel_2596, retro_tbel_2658, retro_tbel_3331, retro_tbel_3764, retro_tbel_3777, retro_tbel_3954, retro_tbel_4082, retro_tbel_4368, retro_tbel_4487, retro_tbel_4728, retro_tbel_817,
Tursiops truncatus ENSTTRG00000015185 ortholog_one2one 1 retrogene
retro_ttru_520,
Vicugna pacos ENSVPAG00000006104 ortholog_one2one 1 retrogene
retro_vpac_48,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_129 94.59 98.01
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2. retro_ptro_809 84.77 100.00
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3. retro_ptro_1331 79.49 77.48
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4. retro_ptro_2065 77.48 98.01
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5. retro_ptro_2259 92.44 78.15
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6. retro_ptro_2750 81.88 98.01
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7. retro_ptro_2838 93.38 100.00
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8. retro_ptro_3046 67.97 99.34
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9. retro_ptro_3167 73.83 97.35
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Download FASTA sequences of all ENSPTRG00000019209 retrocopies