RetrogeneDB ID: | retro_itri_671 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393309.1:12616505..12616957(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSTOG00000010512 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 67.11 % |
Parental protein coverage: | 99.33 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MPRGSRSRTSRVAPPASRAPQMRAAPRPAPAAQPPAAAPPAAVGSPAAAPRQPGLMAQMATTAAGVAVGS |
M...SR..T..V.PP.S.A.QMRAA.R.AP.AQPPAAAPP..VG.PA.AP..PG.M.QM.TT.AG.AVGS | |
Retrocopy | MSLASRKCT*HVNPPNSQASQMRAASRLAPEAQPPAAAPPFTVGLPALAPG*PGVMTQMVTTEAGSAVGS |
Parental | AV-GHTLGHAITGGFSGG---EPAKPDITYQEPQGTQPAQQQQLSDPCFYEIKQFLECAQNQADVKLCEG |
A..G..LGHA.TGGF..G...E..K..ITYQEPQGT.PA.QQQL..PCFYEIKQF.EC.QN...VKL.EG | |
Retrocopy | AE<GARLGHALTGGFNEGSFVELSKHNITYQEPQGTHPA*QQQLGGPCFYEIKQFFECSQNSGNVKLFEG |
Parental | FNEVLKQCRIAN |
F.EVLKQCRIAN | |
Retrocopy | FSEVLKQCRIAN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |