Parental gene:

ENSCJAG00000021267

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:17:74629891..74635017(-)


>ENSCJAG00000021267
ATGCCGCGTGGAAGCCGAAGCCGCACCTCCCGCATGGCCCCTCCGGCCAGCCGGGCCCCTCCGATGAGAGCTGCGCCCAG
GCCAGCACCCGCCGCTCAGCCACCAGCAGCGGCACCCCCCTCTGCAGTTGGCTCTCCTGCTGCTGCGCCCCGGCAGCCAG
GTCTGCTGTCCCAGATGGCAACCACTGCAGCTGGCGTGGCTGTGGGCTCTGCTGTGGGGCACACACTGGGCCACGCCATT
ACTGGGGGCTTCAGTGGAGGAAGTGATCCCGAGCCTGCGAGGCCTGACATCACTTACCAGGAGCCTCAGGGAACCCAGCC
TGCACAGCAGCAGCAGCCTTGCTTCTATGAGATCAAACAGTTCTTGGAGTGTGCCCAGAACCAGGGTGACATCAAGCTCT
GTGAGGGCTTCAGTGAGGTGCTGAAACAGTGCCGACTTGCAAACGGATTGGCTTAA

Library Parental gene expression (RPM)
SRP051959_spleen 20 .42 RPM
SRP051959_skeletal_muscle 47 .17 RPM
SRP051959_lymph_node 20 .98 RPM
SRP051959_lung 14 .32 RPM
SRP051959_liver 30 .17 RPM
SRP051959_kidney 26 .18 RPM
SRP051959_heart 22 .59 RPM
SRP051959_colon 21 .52 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000016050 ortholog_one2many 2 retrogenes
retro_amel_500, retro_amel_976,
Bos taurus ENSBTAG00000040295 ortholog_one2many 2 retrogenes
retro_btau_397, retro_btau_768,
Canis familiaris ENSCAFG00000010178 ortholog_one2many 1 retrogene
retro_cfam_1653,
Callithrix jacchus ENSCJAG00000010824 within_species_paralog 2 retrogenes
retro_cjac_1018, retro_cjac_1204,
Erinaceus europaeus ENSEEUG00000012857 ortholog_many2many 1 retrogene
retro_eeur_398,
Echinops telfairi ENSETEG00000008598 ortholog_many2many 1 retrogene
retro_etel_45,
Homo sapiens ENSG00000106153 ortholog_one2many 8 retrogenes
retro_hsap_116, retro_hsap_1180, retro_hsap_1995, retro_hsap_3063, retro_hsap_3186, retro_hsap_4057, retro_hsap_4184, retro_hsap_4752,
Gorilla gorilla ENSGGOG00000014938 ortholog_one2many 8 retrogenes
retro_ggor_2103, retro_ggor_220, retro_ggor_2725, retro_ggor_2807, retro_ggor_2808, retro_ggor_2958, retro_ggor_918, retro_ggor_989,
Myotis lucifugus ENSMLUG00000015151 ortholog_many2many 1 retrogene
retro_mluc_345,
Macaca mulatta ENSMMUG00000015278 ortholog_many2many 2 retrogenes
retro_mmul_160, retro_mmul_302,
Mus musculus ENSMUSG00000070493 ortholog_one2many 2 retrogenes
retro_mmus_2340, retro_mmus_2536,
Nomascus leucogenys ENSNLEG00000015819 ortholog_one2many 6 retrogenes
retro_nleu_1250, retro_nleu_1657, retro_nleu_2096, retro_nleu_2108, retro_nleu_555, retro_nleu_770,
Otolemur garnettii ENSOGAG00000010097 ortholog_many2many 5 retrogenes
retro_ogar_1161, retro_ogar_158, retro_ogar_1848, retro_ogar_2837, retro_ogar_34,
Pongo abelii ENSPPYG00000017543 ortholog_many2many 4 retrogenes
retro_pabe_131, retro_pabe_139, retro_pabe_1755, retro_pabe_496,
Pan troglodytes ENSPTRG00000019209 ortholog_one2many 9 retrogenes
retro_ptro_129, retro_ptro_1331, retro_ptro_2065, retro_ptro_2259, retro_ptro_2750, retro_ptro_2838, retro_ptro_3046, retro_ptro_3167, retro_ptro_809,
Sus scrofa ENSSSCG00000007743 ortholog_one2many 1 retrogene
retro_sscr_515,
Ictidomys tridecemlineatus ENSSTOG00000010512 ortholog_many2many 3 retrogenes
retro_itri_1870, retro_itri_670, retro_itri_671,
Tupaia belangeri ENSTBEG00000012905 ortholog_one2many 15 retrogenes
retro_tbel_1728, retro_tbel_1891, retro_tbel_2513, retro_tbel_2593, retro_tbel_2596, retro_tbel_2658, retro_tbel_3331, retro_tbel_3764, retro_tbel_3777, retro_tbel_3954, retro_tbel_4082, retro_tbel_4368, retro_tbel_4487, retro_tbel_4728, retro_tbel_817,
Tursiops truncatus ENSTTRG00000015185 ortholog_one2many 1 retrogene
retro_ttru_520,
Vicugna pacos ENSVPAG00000006104 ortholog_one2many 1 retrogene
retro_vpac_48,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_271 98.68 100.00
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Download FASTA sequences of all ENSCJAG00000021267 retrocopies