RetrogeneDB ID: | retro_itri_670 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393309.1:12257804..12258157(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSTOG00000010512 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 82.35 % |
Parental protein coverage: | 77.18 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | GSRS-RTSRVAPPASRAPQMRAAPRPAPAAQPPAAAPPAAVGSPAAAPRQPGLMAQMATTAAGVAVGSAV |
GSRS...S...PPASRAPQMRAAPRPAPAAQPPAAA.P.A..SP.AAPRQPGLMAQMATTA.GVAV.SAV | |
Retrocopy | GSRS<LPSPMVPPASRAPQMRAAPRPAPAAQPPAAALPSAIRSPVAAPRQPGLMAQMATTATGVAVDSAV |
Parental | GHTLGHAITGGFSGG---EPAKPDITYQEPQGTQPAQQQQLSDPCFYEI |
GHTLGHAITGGFSGG...E.AKPDI.YQ.PQGTQ.AQQ.QLSDPCFYEI | |
Retrocopy | GHTLGHAITGGFSGGSTAESAKPDISYQDPQGTQSAQQ*QLSDPCFYEI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |