RetrogeneDB ID: | retro_eeur_398 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_283473:4507..4963(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSEEUG00000012857 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 95.39 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MPRGSRSRTSRMAPPASRAPQMRAAPRPAPAAQPPAAAPPAAVGLPAAAPRQPGLMAQMASTAAGVAVGS |
MPRGSRSRTSRMAPPASRAPQMRAAPRPAPAAQPPAAAPPAAVGLPAAAPRQPGLMAQMASTAAGVAVGS | |
Retrocopy | MPRGSRSRTSRMAPPASRAPQMRAAPRPAPAAQPPAAAPPAAVGLPAAAPRQPGLMAQMASTAAGVAVGS |
Parental | AVGHTIGHALTGGFSGGSNAEPTRPDITYQEPQGAQPVQQQQQQFGPCHYEMKQFLECAQNQSDLKLCEG |
AVGHTIGHALTGGFSGGSNAEPTRPDITYQEPQGAQP.......FGPCHYEMKQFLECAQNQSDLKLCEG | |
Retrocopy | AVGHTIGHALTGGFSGGSNAEPTRPDITYQEPQGAQPXXXXXXXFGPCHYEMKQFLECAQNQSDLKLCEG |
Parental | FSEVLKQCRFAN |
FSEVLKQCRFAN | |
Retrocopy | FSEVLKQCRFAN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 13 .54 RPM | 9 .35 RPM |
SRP017611_kidney | 35 .44 RPM | 33 .57 RPM |
SRP017611_liver | 15 .43 RPM | 10 .77 RPM |