RetrogeneDB ID: | retro_vpac_48 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | GeneScaffold_1211:79902..80330(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CHCHD2 | ||
Ensembl ID: | ENSVPAG00000006104 | ||
Aliases: | None | ||
Description: | coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:HGNC Symbol;Acc:21645] |
Percent Identity: | 73.61 % |
Parental protein coverage: | 78.45 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | QHLLRIPLFR-IRRAVAMP-RGSRSRTSRVAPPASRAPPMRAAPRPAPAAQPPAAVPPSAVGSPAAAPRQ |
Q..L...LF..IR..VAMP..GSRSRTSR.APPAS.AP.M.AAPRP..A.QPPA..PPSA.GSPAAAP.Q | |
Retrocopy | QRPLGVLLFQSIRCTVAMP<SGSRSRTSRMAPPASWAPQMGAAPRPVSAPQPPAVAPPSAIGSPAAAPWQ |
Parental | PGLMAQMATTAAGVAVGSAVGHTLGHAITGGFSGGSNAEPSRPDITYQEPQGSQLTPQQQSGPCFYEMKQ |
PGL.AQMA.TAAGVAVGS.V.HTLG..ITGGFSG.SNAEPSRPDITYQE..G.Q...QQQSGPCF.E.KQ | |
Retrocopy | PGLLAQMAATAAGVAVGSVVRHTLGRTITGGFSGKSNAEPSRPDITYQESRGAQPAQQQQSGPCFFEVKQ |
Parental | FLEC |
FL.C | |
Retrocopy | FLVC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |