RetrogeneDB ID: | retro_pcap_47 | ||
Retrocopylocation | Organism: | Hyrax (Procavia capensis) | |
Coordinates: | GeneScaffold_2405:52129..52449(+) | ||
Located in intron of: | ENSPCAG00000006031 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL9 | ||
Ensembl ID: | ENSPCAG00000005834 | ||
Aliases: | None | ||
Description: | ribosomal protein L9 [Source:HGNC Symbol;Acc:10369] |
Percent Identity: | 82.41 % |
Parental protein coverage: | 55.21 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | GFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKY-IRRVRMRPGVACSVSQAQKDELILEGNDIELVS |
G.RY.MRSVYAHFPINVVIQENG.LVEI.NFLGEK..IRRV...P.VACSVSQAQKDE.ILEGNDIELV. | |
Retrocopy | GCRYNMRSVYAHFPINVVIQENGPLVEIGNFLGEKI>IRRV*VKPSVACSVSQAQKDE*ILEGNDIELV* |
Parental | NSAALIQQATTVKNKDIRKFLDGIYVSEKGT-VQQADE |
NSAALIQQA.TVKNKDI.KFLDG..VSEKGT..QQ.DE | |
Retrocopy | NSAALIQQARTVKNKDI*KFLDGNSVSEKGT>FQQTDE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |