RetrogeneDB ID:

retro_ttru_1242

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:scaffold_108394:321839..322312(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPL9
Ensembl ID:ENSTTRG00000014289
Aliases:None
Description:ribosomal protein L9 [Source:HGNC Symbol;Acc:10369]


Retrocopy-Parental alignment summary:






>retro_ttru_1242
ATGAAGACCATTCTCAACAATCAGACTGTCGACATTCCAAAAAATGTCCACGTTACTCCAAAGGGACACACGGTTATTGT
GAAGGGCCCCAGAGGCACCCTGCAATGGGGCTTCAATCACATCAGTGTAGAACTCAGTCTGCTTGGAAAGAAAAAGAAGA
GTCTCCAAGTTGACAAATGGTAGGGAAATAGAAAGGAACTGGCAACTGTTTACACTATCTGTAGTCATGTATAGAACATG
ATCAAGGGTGTTACAATGGGCTTCCGTTACACATGAGGTCTGTGTATGCTCACTTCCCCATCAACGTTGTTATTCAGGAG
AATGGTTCTCTTGTTGAAATCTGAAATTTTGGGGGTGAAAAATACATCCGCAGGGCTCAGATGAGGCCAGGCGTTGCTTG
TTCAGTATCTCAAGCCCAGAAAGATGAGTTGATTCTTGAAGGAAATGATATTGAACTTGTGTCAAATTCAGCT

ORF - retro_ttru_1242 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 86.16 %
Parental protein coverage: 84.95 %
Number of stop codons detected: 3
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalMKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKWWGNRKELATV
MKTIL.NQTVDIP.NV..T.KG.TVIVKGPRGTL...FNHI.VELSLLGKKKK.L.VDKW.GNRKELATV
RetrocopyMKTILNNQTVDIPKNVHVTPKGHTVIVKGPRGTLQWGFNHISVELSLLGKKKKSLQVDKW*GNRKELATV
ParentalRTICSHVQNMIKGVTLGFRY-KMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQA
.TICSHV.NMIKGVT.GFRY..MRSVYAHFPINVVIQENGSLVEI.NF.GEKYIRR..MRPGVACSVSQA
RetrocopyYTICSHV*NMIKGVTMGFRY<HMRSVYAHFPINVVIQENGSLVEI*NFGGEKYIRRAQMRPGVACSVSQA
ParentalQKDELILEGNDIELVSNSA
QKDELILEGNDIELVSNSA
RetrocopyQKDELILEGNDIELVSNSA

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_1242 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_1242 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 20 parental genes, and 323 retrocopies.

Species Parental gene accession Retrocopies number
Anolis carolinensis ENSACAG000000073171 retrocopy
Ailuropoda melanoleuca ENSAMEG0000000318731 retrocopies
Bos taurus ENSBTAG000000145183 retrocopies
Canis familiaris ENSCAFG0000001600828 retrocopies
Danio rerio ENSDARG000000373501 retrocopy
Dasypus novemcinctus ENSDNOG0000000741118 retrocopies
Erinaceus europaeus ENSEEUG0000000439439 retrocopies
Gadus morhua ENSGMOG000000010021 retrocopy
Loxodonta africana ENSLAFG0000001202138 retrocopies
Macropus eugenii ENSMEUG000000167228 retrocopies
Myotis lucifugus ENSMLUG0000000459734 retrocopies
Macaca mulatta ENSMMUG0000000855322 retrocopies
Monodelphis domestica ENSMODG000000205537 retrocopies
Otolemur garnettii ENSOGAG0000000493520 retrocopies
Procavia capensis ENSPCAG0000000583422 retrocopies
Pongo abelii ENSPPYG0000001467510 retrocopies
Sarcophilus harrisii ENSSHAG000000049188 retrocopies
Tupaia belangeri ENSTBEG0000000604218 retrocopies
Tursiops truncatus ENSTTRG00000014289 13 retrocopies
Vicugna pacos ENSVPAG000000020231 retrocopy



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