RetrogeneDB ID: | retro_pcap_417 | ||
Retrocopylocation | Organism: | Hyrax (Procavia capensis) | |
Coordinates: | scaffold_78404:4545..4862(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL9 | ||
Ensembl ID: | ENSPCAG00000005834 | ||
Aliases: | None | ||
Description: | ribosomal protein L9 [Source:HGNC Symbol;Acc:10369] |
Percent Identity: | 79.44 % |
Parental protein coverage: | 55.21 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 1 |
Parental | GFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSN |
GF.YK.RS.YAHFPIN.VIQENGSLVEI.NFLGEKYI.RV..RPGVACSVSQ.QKDELI.EGNDI.LV.N | |
Retrocopy | GFHYKTRSGYAHFPINMVIQENGSLVEIQNFLGEKYICRVWTRPGVACSVSQTQKDELIFEGNDIGLVLN |
Parental | SAALIQQAT-TVKNKDIRKFLDGIYVSEKGTVQQADE |
SAALI..AT.T.KN.DI.KFLDGI.VSEK.TVQ.AD. | |
Retrocopy | SAALI**AT<TAKN*DI*KFLDGICVSEKRTVQ*ADK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |