RetrogeneDB - Parental gene ENSPCAG00000005834 details

                            
>ENSPCAG00000005834
ATGAAGACCATTCTCAGCAACCAGACTGTCGACATTCCAGAAAATGTCGACATCACTCTGAAGGGACGCACAGTTATTGT

GAAAGGCCCCAGAGGAGCCTTGCGGAGGGACTTCAACCACATCAATGTAGAACTCAGTCTCCTTGGAAAGAAAAAGAAGA

GGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

NNNNNNNNNNNNNNNNNNGGCTTCCGTTACAAGATGAGGTCTGTGTATGCTCACTTCCCCATCAATGTGGTCATTCAGGA

AAATGGGTCACTTGTTGAAATCCGAAACTTCTTGGGTGAAAAATATATCCGCAGGGTTCGGATGAGGCCAGGTGTTGCTT

GTTCGGTATCTCAAGCCCAGAAAGATGAATTAATTCTTGAAGGAAATGACATTGAACTTGTATCAAATTCAGCTGCTTTA

ATTCAGCAAGCCACAACAGTTAAAAACAAGGATATTCGAAAATTTCTGGATGGTATCTATGTCTCTGAAAAAGGAACTGT

TCAGCAGGCTGATGAGTAA

Species	Parental gene accession	Homology type	Retrogenes number
Anolis carolinensis	ENSACAG00000007317	ortholog_one2one	1 retrogene	retro_acar_163,
Ailuropoda melanoleuca	ENSAMEG00000003187	ortholog_one2many	31 retrogenes	retro_amel_1018, retro_amel_1078, retro_amel_1080, retro_amel_1081, retro_amel_1108, retro_amel_1132, retro_amel_1137, retro_amel_1226, retro_amel_1246, retro_amel_1315, retro_amel_1374, retro_amel_1413, retro_amel_1498, retro_amel_1507, retro_amel_1539, retro_amel_1645, retro_amel_1690, retro_amel_1779, retro_amel_1848, retro_amel_247, retro_amel_256, retro_amel_380, retro_amel_457, retro_amel_652, retro_amel_665, retro_amel_702, retro_amel_727, retro_amel_872, retro_amel_881, retro_amel_951, retro_amel_963,
Bos taurus	ENSBTAG00000014518	ortholog_one2many	3 retrogenes	retro_btau_200, retro_btau_231, retro_btau_51,
Canis familiaris	ENSCAFG00000016008	possible_ortholog	28 retrogenes	retro_cfam_1044, retro_cfam_1334, retro_cfam_1401, retro_cfam_1455, retro_cfam_1565, retro_cfam_1571, retro_cfam_1610, retro_cfam_1693, retro_cfam_1737, retro_cfam_1809, retro_cfam_1922, retro_cfam_1938, retro_cfam_207, retro_cfam_245, retro_cfam_288, retro_cfam_416, retro_cfam_434, retro_cfam_460, retro_cfam_636, retro_cfam_642, retro_cfam_644, retro_cfam_722, retro_cfam_769, retro_cfam_793, retro_cfam_86, retro_cfam_890, retro_cfam_952, retro_cfam_982,
Danio rerio	ENSDARG00000037350	ortholog_one2one	1 retrogene	retro_drer_18,
Dasypus novemcinctus	ENSDNOG00000007411	possible_ortholog	18 retrogenes	retro_dnov_1298, retro_dnov_1560, retro_dnov_1684, retro_dnov_1845, retro_dnov_1877, retro_dnov_1936, retro_dnov_2148, retro_dnov_2277, retro_dnov_2624, retro_dnov_2659, retro_dnov_282, retro_dnov_407, retro_dnov_437, retro_dnov_450, retro_dnov_615, retro_dnov_787, retro_dnov_82, retro_dnov_975,
Erinaceus europaeus	ENSEEUG00000004394	possible_ortholog	39 retrogenes	retro_eeur_11, retro_eeur_136, retro_eeur_153, retro_eeur_162, retro_eeur_184, retro_eeur_191, retro_eeur_229, retro_eeur_246, retro_eeur_27, retro_eeur_279, retro_eeur_280, retro_eeur_282, retro_eeur_296, retro_eeur_307, retro_eeur_352, retro_eeur_383, retro_eeur_399, retro_eeur_410, retro_eeur_429, retro_eeur_433, retro_eeur_449, retro_eeur_453, retro_eeur_461, retro_eeur_471, retro_eeur_486, retro_eeur_493, retro_eeur_51, retro_eeur_540, retro_eeur_572, retro_eeur_590, retro_eeur_599, retro_eeur_600, retro_eeur_619, retro_eeur_624, retro_eeur_65, retro_eeur_670, retro_eeur_678, retro_eeur_68, retro_eeur_98,
Gadus morhua	ENSGMOG00000001002	ortholog_one2one	1 retrogene	retro_gmor_28,
Loxodonta africana	ENSLAFG00000012021	possible_ortholog	38 retrogenes	retro_lafr_1009, retro_lafr_1020, retro_lafr_1047, retro_lafr_1095, retro_lafr_1106, retro_lafr_1126, retro_lafr_1145, retro_lafr_1147, retro_lafr_1151, retro_lafr_1174, retro_lafr_1205, retro_lafr_1224, retro_lafr_1225, retro_lafr_1254, retro_lafr_139, retro_lafr_216, retro_lafr_229, retro_lafr_232, retro_lafr_246, retro_lafr_29, retro_lafr_310, retro_lafr_317, retro_lafr_373, retro_lafr_423, retro_lafr_451, retro_lafr_470, retro_lafr_495, retro_lafr_561, retro_lafr_569, retro_lafr_590, retro_lafr_644, retro_lafr_657, retro_lafr_735, retro_lafr_744, retro_lafr_857, retro_lafr_889, retro_lafr_934, retro_lafr_95,
Macropus eugenii	ENSMEUG00000016722	ortholog_one2many	8 retrogenes	retro_meug_1087, retro_meug_1411, retro_meug_1961, retro_meug_22, retro_meug_440, retro_meug_490, retro_meug_650, retro_meug_763,
Myotis lucifugus	ENSMLUG00000004597	possible_ortholog	34 retrogenes	retro_mluc_1028, retro_mluc_1029, retro_mluc_1261, retro_mluc_1269, retro_mluc_127, retro_mluc_1320, retro_mluc_1368, retro_mluc_1380, retro_mluc_1572, retro_mluc_1655, retro_mluc_1704, retro_mluc_1757, retro_mluc_1813, retro_mluc_1858, retro_mluc_1880, retro_mluc_1983, retro_mluc_2041, retro_mluc_2067, retro_mluc_2112, retro_mluc_2119, retro_mluc_220, retro_mluc_2229, retro_mluc_223, retro_mluc_2230, retro_mluc_2370, retro_mluc_2428, retro_mluc_2495, retro_mluc_2611, retro_mluc_293, retro_mluc_461, retro_mluc_533, retro_mluc_648, retro_mluc_75, retro_mluc_895,
Macaca mulatta	ENSMMUG00000008553	possible_ortholog	22 retrogenes	retro_mmul_1053, retro_mmul_1076, retro_mmul_1097, retro_mmul_1220, retro_mmul_1259, retro_mmul_1272, retro_mmul_1316, retro_mmul_1336, retro_mmul_1404, retro_mmul_1513, retro_mmul_1714, retro_mmul_180, retro_mmul_1924, retro_mmul_2044, retro_mmul_2070, retro_mmul_2167, retro_mmul_2177, retro_mmul_2185, retro_mmul_321, retro_mmul_345, retro_mmul_833, retro_mmul_961,
Monodelphis domestica	ENSMODG00000020553	ortholog_one2one	7 retrogenes	retro_mdom_1026, retro_mdom_1078, retro_mdom_1261, retro_mdom_1352, retro_mdom_1414, retro_mdom_401, retro_mdom_637,
Otolemur garnettii	ENSOGAG00000004935	possible_ortholog	20 retrogenes	retro_ogar_117, retro_ogar_1223, retro_ogar_1471, retro_ogar_1614, retro_ogar_1694, retro_ogar_1807, retro_ogar_1884, retro_ogar_1906, retro_ogar_1933, retro_ogar_2162, retro_ogar_2173, retro_ogar_2806, retro_ogar_3036, retro_ogar_3115, retro_ogar_3276, retro_ogar_329, retro_ogar_429, retro_ogar_864, retro_ogar_886, retro_ogar_963,
Pongo abelii	ENSPPYG00000014675	possible_ortholog	10 retrogenes	retro_pabe_1117, retro_pabe_1157, retro_pabe_1433, retro_pabe_1521, retro_pabe_1523, retro_pabe_162, retro_pabe_2148, retro_pabe_2372, retro_pabe_2695, retro_pabe_3155,
Sarcophilus harrisii	ENSSHAG00000004918	ortholog_one2one	8 retrogenes	retro_shar_191, retro_shar_192, retro_shar_236, retro_shar_340, retro_shar_359, retro_shar_406, retro_shar_600, retro_shar_607,
Tupaia belangeri	ENSTBEG00000006042	possible_ortholog	18 retrogenes	retro_tbel_1061, retro_tbel_142, retro_tbel_1761, retro_tbel_18, retro_tbel_1852, retro_tbel_2152, retro_tbel_28, retro_tbel_2902, retro_tbel_2937, retro_tbel_30, retro_tbel_325, retro_tbel_340, retro_tbel_3744, retro_tbel_4288, retro_tbel_44, retro_tbel_4430, retro_tbel_4492, retro_tbel_995,
Tursiops truncatus	ENSTTRG00000014289	ortholog_one2one	13 retrogenes	retro_ttru_1019, retro_ttru_1067, retro_ttru_1116, retro_ttru_1179, retro_ttru_1242, retro_ttru_1250, retro_ttru_1354, retro_ttru_1386, retro_ttru_283, retro_ttru_500, retro_ttru_60, retro_ttru_653, retro_ttru_910,
Vicugna pacos	ENSVPAG00000002023	possible_ortholog	1 retrogene	retro_vpac_11,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_pcap_39	98.11	55.21	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_pcap_47	82.41	55.21	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_pcap_49	90.74	55.21	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_pcap_50	76.64	55.21	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_pcap_60	68.57	54.69	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_pcap_75	65.35	52.08	Please wait, loading	Please wait, loading	Please wait, loading
7.	retro_pcap_79	85.85	55.21	Please wait, loading	Please wait, loading	Please wait, loading
8.	retro_pcap_92	68.57	54.69	Please wait, loading	Please wait, loading	Please wait, loading
9.	retro_pcap_153	60.36	55.21	Please wait, loading	Please wait, loading	Please wait, loading
10.	retro_pcap_209	90.57	55.21	Please wait, loading	Please wait, loading	Please wait, loading
11.	retro_pcap_216	94.34	55.21	Please wait, loading	Please wait, loading	Please wait, loading
12.	retro_pcap_225	95.28	55.21	Please wait, loading	Please wait, loading	Please wait, loading
13.	retro_pcap_229	90.48	54.69	Please wait, loading	Please wait, loading	Please wait, loading
14.	retro_pcap_243	55.05	54.69	Please wait, loading	Please wait, loading	Please wait, loading
15.	retro_pcap_254	96.12	53.65	Please wait, loading	Please wait, loading	Please wait, loading
16.	retro_pcap_259	93.46	55.21	Please wait, loading	Please wait, loading	Please wait, loading
17.	retro_pcap_325	89.62	55.21	Please wait, loading	Please wait, loading	Please wait, loading
18.	retro_pcap_387	97.17	55.21	Please wait, loading	Please wait, loading	Please wait, loading
19.	retro_pcap_410	87.74	55.21	Please wait, loading	Please wait, loading	Please wait, loading
20.	retro_pcap_411	81.90	54.69	Please wait, loading	Please wait, loading	Please wait, loading
21.	retro_pcap_417	79.44	55.21	Please wait, loading	Please wait, loading	Please wait, loading
22.	retro_pcap_418	83.18	55.21	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSPCAG00000005834 retrocopies

Parental gene:	RPL9, ENSPCAG00000005834
Aliases:	None
Description:	ribosomal protein L9 [Source:HGNC Symbol;Acc:10369]
Organism:	*Hyrax (Procavia capensis)*
Coordinates:	GeneScaffold_3244:57950..61091(-)

Parental gene:

RPL9, ENSPCAG00000005834