RetrogeneDB ID: | retro_pcap_153 | ||
Retrocopylocation | Organism: | Hyrax (Procavia capensis) | |
Coordinates: | scaffold_116976:5477..5797(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL9 | ||
Ensembl ID: | ENSPCAG00000005834 | ||
Aliases: | None | ||
Description: | ribosomal protein L9 [Source:HGNC Symbol;Acc:10369] |
Percent Identity: | 60.36 % |
Parental protein coverage: | 55.21 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | GFRYKMRSVYAHFPINVVIQENGSLV-EIRNFLGEKYIRRVRMRPGVACSVSQAQKDELILEGNDIEL-V |
GF..K.R.VY.HF.IN.VIQ..GSL..EI.NFLGEK.I.RV.M.PGVACSV.QA.KDEL.L.GN...... | |
Retrocopy | GFHFKIRYVYTHFLINIVIQ-CGSLA<EIQNFLGEKHILRVWMKPGVACSVFQAKKDELLLKGNNNDI<L |
Parental | SNSAALIQQATTV--KNKDIRKF-LDGIYVSEKGTVQQADE |
S..A.LI.Q..T.....K...KF.LDGIYV..KGTVQQA.E | |
Retrocopy | SDLAVLI*QVPTAEKRKKKYPKF>LDGIYVFGKGTVQQANE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |