Parental gene:

RPL9, ENSLAFG00000012021

Aliases:None
Description:None
Organism:Elephant (Loxodonta africana)
Coordinates:scaffold_18:42334521..42337601(-)


>ENSLAFG00000012021
ATGAAGACCATTCTCAGCAACCAGACTGTCGACATTCCGGAAAATGTCGACATCACTCTGAAGGGACGCACAGTTATTGT
GAAGGGCCCCAGAGGAACTTTGCGGAGGGACTTCAATCACATCAATGTAGAACTCAGTCTCCTTGGAAAGAAAAAGAAGA
GGCTTCGTGTTGACAAATGGTGGGGAAATAGAAAGGAACTGGCTACAGTTCGCACTATCTGCAGTCATGTACAGAACATG
ATCAAGGGTGTTACACTGGGCTTCCGTTACAAGATGAGGTCTGTGTATGCTCACTTCCCCATCAACGTTGTTATTCAGGA
GAGTGGGTCACTTGTTGAAATCCGAAACTTCTTGGGTGAAAAATACATCCGTAGGGTTCGGATGAGGCCAGGTGTTGCTT
GTTCAGTATCTCAAGCCCAGAAGGATGAGTTAATTCTTGAAGGAAATGACATTGAACTTGTATCAAATTCAGCTGCTTTA
ATTCAGCAAGCCACGACAGTTAAAAACAAGGATATCCGAAAATTTTTGGATGGCATCTATGTTTCTGAAAAAGGAACTGT
TCAACAGGCCGACGAGTAA

Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000007317 ortholog_one2many 1 retrogene
Ailuropoda melanoleuca ENSAMEG00000003187 possible_ortholog 31 retrogenes
Bos taurus ENSBTAG00000014518 possible_ortholog 3 retrogenes
Canis familiaris ENSCAFG00000016008 ortholog_one2many 28 retrogenes
Callithrix jacchus ENSCJAG00000000723 possible_ortholog 29 retrogenes
Danio rerio ENSDARG00000037350 ortholog_one2many 1 retrogene
Dasypus novemcinctus ENSDNOG00000007411 possible_ortholog 18 retrogenes
Equus caballus ENSECAG00000016489 ortholog_one2many 7 retrogenes
Erinaceus europaeus ENSEEUG00000004394 possible_ortholog 39 retrogenes
Felis catus ENSFCAG00000012284 ortholog_one2many 34 retrogenes
Homo sapiens ENSG00000163682 possible_ortholog 28 retrogenes
Gorilla gorilla ENSGGOG00000022799 possible_ortholog 26 retrogenes
Gadus morhua ENSGMOG00000001002 ortholog_one2many 1 retrogene
Macropus eugenii ENSMEUG00000016722 ortholog_many2many 8 retrogenes
Microcebus murinus ENSMICG00000016778 possible_ortholog 18 retrogenes
Myotis lucifugus ENSMLUG00000004597 possible_ortholog 34 retrogenes
Macaca mulatta ENSMMUG00000008553 ortholog_one2one 22 retrogenes
Monodelphis domestica ENSMODG00000020553 ortholog_one2many 7 retrogenes
Nomascus leucogenys ENSNLEG00000017100 possible_ortholog 26 retrogenes
Otolemur garnettii ENSOGAG00000004935 possible_ortholog 20 retrogenes
Procavia capensis ENSPCAG00000005834 possible_ortholog 22 retrogenes
Pongo abelii ENSPPYG00000014675 possible_ortholog 10 retrogenes
Pteropus vampyrus ENSPVAG00000000919 possible_ortholog 49 retrogenes
Sarcophilus harrisii ENSSHAG00000004918 ortholog_one2many 8 retrogenes
Sus scrofa ENSSSCG00000025192 ortholog_one2many 15 retrogenes
Tupaia belangeri ENSTBEG00000006042 ortholog_one2many 18 retrogenes
Tursiops truncatus ENSTTRG00000014289 possible_ortholog 13 retrogenes
Vicugna pacos ENSVPAG00000002023 possible_ortholog 1 retrogene

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_lafr_29 90.62 100.00
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2. retro_lafr_95 80.63 99.48
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3. retro_lafr_139 77.10 68.23
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4. retro_lafr_216 87.43 99.48
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5. retro_lafr_229 86.01 100.00
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6. retro_lafr_232 78.97 100.00
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7. retro_lafr_246 96.88 100.00
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8. retro_lafr_310 96.89 100.00
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9. retro_lafr_317 85.23 77.60
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10. retro_lafr_373 68.18 56.25
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11. retro_lafr_423 68.78 96.35
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12. retro_lafr_451 78.62 82.81
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13. retro_lafr_470 69.93 73.44
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14. retro_lafr_495 66.00 51.04
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15. retro_lafr_561 73.21 86.98
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16. retro_lafr_569 70.00 82.81
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17. retro_lafr_590 93.23 100.00
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18. retro_lafr_644 69.07 99.48
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19. retro_lafr_657 81.63 76.04
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20. retro_lafr_735 70.92 100.00
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21. retro_lafr_744 81.41 81.25
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22. retro_lafr_857 75.57 67.19
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23. retro_lafr_889 71.94 100.00
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24. retro_lafr_934 80.00 100.00
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25. retro_lafr_1009 74.45 71.35
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26. retro_lafr_1020 75.57 67.19
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27. retro_lafr_1047 61.54 93.23
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28. retro_lafr_1095 78.65 99.48
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29. retro_lafr_1106 68.33 61.98
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30. retro_lafr_1126 78.74 90.10
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31. retro_lafr_1145 88.66 100.00
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32. retro_lafr_1147 74.23 100.00
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33. retro_lafr_1151 71.29 52.60
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34. retro_lafr_1174 96.23 82.81
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35. retro_lafr_1205 95.00 93.75
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36. retro_lafr_1224 77.85 81.77
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37. retro_lafr_1225 66.40 62.50
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38. retro_lafr_1254 73.08 93.23
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Download FASTA sequences of all ENSLAFG00000012021 retrocopies