RetrogeneDB ID: | retro_ptro_2755 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 8:59651901..59652836(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | C1GALT1 | ||
Ensembl ID: | ENSPTRG00000018925 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 60. % |
Parental protein coverage: | 85.4 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | LHNDPHARHSDDNGQNHLEGQMNFNADSSQHKDENTDIAENLYHKVRILCWVMTGPQNLEKKAK-HVKAT |
..N....R.SDD.GQNHL...M...A..S..K..NT.....LY.K..ILCW.MTGPQNL......H...T | |
Retrocopy | INNYSYVRPSDDTGQNHLKRLMKLIANASHDKYQNTGVTDKLYQKMKILCWIMTGPQNLXXXGH>HIRDT |
Parental | WAQRCNKVLFMSSEENKDFPAVGLKTKEGRDQLYWKTIKAFQYVHEHYLEDADWFLKADDDT--YVILDN |
.AQ.CNK.LFMSS.ENK.F..VGL.TKE.R.QL.WK..KAFQY.H.HYLE..DWF.KADDD...Y.ILDN | |
Retrocopy | GAQGCNKALFMSSKENKGFSTVGLHTKEDRNQLSWKIVKAFQYAHDHYLEYMDWFMKADDDICIYTILDN |
Parental | LRWLLSKYDPEEPIYFGRRFKPYVKQGYMSGGAGYVLSKEALKRFVDAFKTDKCTHSSSIEDLALGRCME |
L.WLL..Y.P.E..YFG.RFK...KQ.YM.GGAGYVLSKEA..R..D..KT...T..S..E..ALGRCM. | |
Retrocopy | LKWLLTNYNPDESTYFGKRFKHCRKQDYMTGGAGYVLSKEASRRLIDVVKTKTGTPVSFSEYMALGRCMD |
Parental | IMNVEAGDSRDTIGKETFHPFVPEHHLIKGYL-PRTF-WYWNYNYYPPVEGPGCCSDLAVSFHYVDSTTM |
...VE..DSR...GKETFHPF.....LI.G.L..RTF..YW.YNYYP.VE.P.CCSD.A.SF.YVD.T.. | |
Retrocopy | VVKVEPEDSRYHTGKETFHPFLAKQPLITGFL<TRTF<LYWKYNYYPSVEDPSCCSDFAISFYYVDATAI |
Parental | YELEYLVYHLRPYGYLYRYQPTLPEHILKEISQAN |
Y.LEYL.YHL..YGYLYRYQP.LPE..LKEIS.AN | |
Retrocopy | YGLEYLIYHLYLYGYLYRYQPALPEDLLKEISKAN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 3 .52 RPM |
SRP007412_cerebellum | 0 .00 RPM | 3 .01 RPM |
SRP007412_heart | 0 .00 RPM | 4 .84 RPM |
SRP007412_kidney | 0 .00 RPM | 10 .41 RPM |
SRP007412_liver | 0 .00 RPM | 3 .11 RPM |
SRP007412_testis | 0 .00 RPM | 2 .53 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4065 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000000225 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000017353 | 2 retrocopies | |
Homo sapiens | ENSG00000106392 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000000063 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000014789 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000016338 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000026002 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000012847 | 1 retrocopy | |
Petromyzon marinus | ENSPMAG00000001562 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000018925 | 2 retrocopies |
retro_ptro_2266, retro_ptro_2755 ,
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