Parental gene: | C1GALT1, ENSG00000106392 |
| Aliases: | C1GALT1, C1GALT, T-synthase |
| Description: | core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1 [Source:HGNC Symbol;Acc:24337] |
| Organism: | Human (Homo sapiens) |
| Coordinates: | 7:7196564..7288251(+) |
>ENSG00000106392
ATGGCCTCTAAATCCTGGCTGAATTTTTTAACCTTCCTCTGTGGATCAGCAATAGGATTTCTTTTATGTTCTCAGCTATT
TAGTATTTTGTTGGGAGAAAAGGTTGACACCCAGCCTAATGTTCTTCATAATGATCCTCATGCAAGGCATTCAGATGATA
ATGGACAGAATCATCTAGAAGGACAAATGAACTTCAATGCAGATTCTAGCCAACATAAAGATGAGAACACAGACATTGCT
GAAAACCTCTATCAGAAAGTTAGAATTCTTTGCTGGGTTATGACCGGCCCTCAAAACCTAGAGAAAAAGGCCAAACACGT
CAAAGCTACTTGGGCCCAGCGTTGTAACAAAGTGTTGTTTATGAGTTCAGAAGAAAATAAAGACTTCCCTGCTGTGGGAC
TGAAAACCAAAGAAGGCAGAGATCAACTATACTGGAAAACAATTAAAGCTTTTCAGTATGTTCATGAACATTATTTAGAA
GATGCTGATTGGTTTTTGAAAGCAGATGATGACACGTATGTCATACTAGACAATTTGAGGTGGCTTCTTTCAAAATACGA
CCCTGAAGAACCCATTTACTTTGGGAGAAGATTTAAGCCTTATGTAAAGCAGGGCTACATGAGTGGAGGAGCAGGATATG
TACTAAGCAAAGAAGCCTTGAAAAGATTTGTTGATGCATTTAAAACAGACAAGTGTACACATAGTTCCTCCATTGAAGAC
TTAGCACTGGGGAGATGCATGGAAATTATGAATGTAGAAGCAGGAGATTCCAGAGATACCATTGGAAAAGAAACTTTTCA
TCCCTTTGTGCCAGAACACCATTTAATTAAAGGTTATCTACCTAGAACGTTTTGGTACTGGAATTACAACTATTATCCTC
CTGTAGAGGGTCCTGGTTGCTGCTCTGATCTTGCAGTTTCTTTTCACTATGTTGATTCTACAACCATGTATGAGTTAGAA
TACCTCGTTTATCATCTTCGTCCATATGGTTATTTATACAGATATCAACCTACCTTACCTGAACGTATACTAAAGGAAAT
TAGTCAAGCAAACAAAAATGAAGATACAAAAGTGAAGTTAGGAAATCCTTGA
ATGGCCTCTAAATCCTGGCTGAATTTTTTAACCTTCCTCTGTGGATCAGCAATAGGATTTCTTTTATGTTCTCAGCTATT
TAGTATTTTGTTGGGAGAAAAGGTTGACACCCAGCCTAATGTTCTTCATAATGATCCTCATGCAAGGCATTCAGATGATA
ATGGACAGAATCATCTAGAAGGACAAATGAACTTCAATGCAGATTCTAGCCAACATAAAGATGAGAACACAGACATTGCT
GAAAACCTCTATCAGAAAGTTAGAATTCTTTGCTGGGTTATGACCGGCCCTCAAAACCTAGAGAAAAAGGCCAAACACGT
CAAAGCTACTTGGGCCCAGCGTTGTAACAAAGTGTTGTTTATGAGTTCAGAAGAAAATAAAGACTTCCCTGCTGTGGGAC
TGAAAACCAAAGAAGGCAGAGATCAACTATACTGGAAAACAATTAAAGCTTTTCAGTATGTTCATGAACATTATTTAGAA
GATGCTGATTGGTTTTTGAAAGCAGATGATGACACGTATGTCATACTAGACAATTTGAGGTGGCTTCTTTCAAAATACGA
CCCTGAAGAACCCATTTACTTTGGGAGAAGATTTAAGCCTTATGTAAAGCAGGGCTACATGAGTGGAGGAGCAGGATATG
TACTAAGCAAAGAAGCCTTGAAAAGATTTGTTGATGCATTTAAAACAGACAAGTGTACACATAGTTCCTCCATTGAAGAC
TTAGCACTGGGGAGATGCATGGAAATTATGAATGTAGAAGCAGGAGATTCCAGAGATACCATTGGAAAAGAAACTTTTCA
TCCCTTTGTGCCAGAACACCATTTAATTAAAGGTTATCTACCTAGAACGTTTTGGTACTGGAATTACAACTATTATCCTC
CTGTAGAGGGTCCTGGTTGCTGCTCTGATCTTGCAGTTTCTTTTCACTATGTTGATTCTACAACCATGTATGAGTTAGAA
TACCTCGTTTATCATCTTCGTCCATATGGTTATTTATACAGATATCAACCTACCTTACCTGAACGTATACTAAAGGAAAT
TAGTCAAGCAAACAAAAATGAAGATACAAAAGTGAAGTTAGGAAATCCTTGA
| Library | Parental gene expression (RPM) |
|---|---|
| bodymap2_liver | 19 .77 RPM |
| bodymap2_lung | 35 .60 RPM |
| bodymap2_breast | 33 .37 RPM |
| bodymap2_adipose | 20 .37 RPM |
| bodymap2_adrenal | 35 .94 RPM |
| bodymap2_skeletal_muscle | 20 .52 RPM |
| bodymap2_thyroid | 23 .31 RPM |
| bodymap2_prostate | 22 .76 RPM |
| bodymap2_colon | 16 .71 RPM |
| bodymap2_testis | 23 .23 RPM |
| bodymap2_brain | 44 .51 RPM |
| bodymap2_heart | 27 .95 RPM |
| bodymap2_white_blood_cells | 84 .76 RPM |
| bodymap2_lymph_node | 43 .05 RPM |
| bodymap2_ovary | 25 .50 RPM |
| bodymap2_kidney | 62 .62 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Choloepus hoffmanni | ENSCHOG00000000225 | ortholog_one2one | 2 retrogenes | |
| Dasypus novemcinctus | ENSDNOG00000017353 | ortholog_one2one | 2 retrogenes | |
| Loxodonta africana | ENSLAFG00000000063 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000014789 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000016338 | ortholog_one2one | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000026002 | ortholog_one2many | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000012847 | ortholog_one2one | 1 retrogene | |
| Petromyzon marinus | ENSPMAG00000001562 | ortholog_one2many | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000018925 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_hsap_3177 | 87.16 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_hsap_4065 | 60.24 | 88.71 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSG00000106392 retrocopies