RetrogeneDB ID: | retro_ogar_855 | ||
Retrocopylocation | Organism: | Bushbaby (Otolemur garnettii) | |
Coordinates: | GL873529.1:1695608..1696460(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | C1GALT1 | ||
Ensembl ID: | ENSOGAG00000012847 | ||
Aliases: | None | ||
Description: | core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1 [Source:HGNC Symbol;Acc:24337] |
Percent Identity: | 81.88 % |
Parental protein coverage: | 78.51 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | CSQLFSILLGQQSNNQPNILHNDPHARHSDDNGGNHLEGQMNFNVDASQHKDENTDIAEHLYQKVKILCW |
CS.LFSILLG.QS.NQPN.LHND.HARHSDD.GGNHLEGQMNF.VDA.Q.KDENTD.AEHLYQK.K.LC. | |
Retrocopy | CSKLFSILLGEQSDNQPNTLHNDLHARHSDDLGGNHLEGQMNFTVDAPQRKDENTDAAEHLYQKAKTLC* |
Parental | IMTGPQNLEKKAKHVKATWAQRCNKVLFMSSEENKDFPTVGLKTKEGRDQLYWKTIKAFHYVHDHYLEDA |
IMTG.QNLEKKAK.VKATWAQ.CN.VLF.SSEENKDFPTVGLKTKEGRDQLYWKT..AFHYVHDHY.ED. | |
Retrocopy | IMTGSQNLEKKAKYVKATWAQCCNRVLFLSSEENKDFPTVGLKTKEGRDQLYWKTMEAFHYVHDHYSEDV |
Parental | DWFMKADDDTYVIVDNLRWLLSKHDPKDPIYFGRRFKPYVKQGYMSGGAGYVL-SKEALKRFVDAFKTDK |
.WFMKADDDTYV.VDN.RW.LSK.DPK.PIYF.RR...YVKQGYMSGGAGYVL..KEALKRFVDAFKTDK | |
Retrocopy | GWFMKADDDTYVVVDNFRWVLSK*DPKEPIYFRRRSEHYVKQGYMSGGAGYVL<NKEALKRFVDAFKTDK |
Parental | CTHSSSIEDLAMGKCMEIMNVEAGDSRDTTGKETFHPFVP-EHHLIKGYLPRTFWYWNYNYYPPVEGPGC |
CT.SSS.ED.A.G.CM.IMNVE.GDSR.TT.KETFHPFVP..H.LI.GYLPRTFWYWN.N.YPP.EGPGC | |
Retrocopy | CTQSSSTED*ALGRCMDIMNVEVGDSRGTTAKETFHPFVP>HH-LIRGYLPRTFWYWNWNCYPPAEGPGC |
Parental | CSDLAIS |
CSDL..S | |
Retrocopy | CSDLVMS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000000225 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000017353 | 2 retrocopies | |
Homo sapiens | ENSG00000106392 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000000063 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000014789 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000016338 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000026002 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000012847 | 1 retrocopy |
retro_ogar_855 ,
|
Petromyzon marinus | ENSPMAG00000001562 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000018925 | 2 retrocopies |