Parental gene: | C1GALT1, ENSPTRG00000018925 |
| Aliases: | None |
| Description: | None |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 7:5851299..5861386(+) |
>ENSPTRG00000018925
ATGGCCTCTAAATCCTGGCTGAATTTTTTAACCTTCCTCTGTGGATCAGCAATAGGATTTCTTTTATGTTCTCAGCTATT
TAGTATTTTGTTGGGAGAAAAGGGTGACACCCAGCCTAATGTTCTTCATAATGATCCTCATGCAAGGCATTCAGATGATA
ATGGACAGAATCATCTAGAAGGACAAATGAACTTCAATGCAGATTCTAGCCAACATAAAGATGAGAACACAGACATTGCT
GAAAACCTCTATCACAAAGTTAGAATTCTTTGCTGGGTTATGACCGGCCCTCAAAACCTAGAGAAAAAGGCCAAACACGT
CAAAGCTACTTGGGCCCAGCGTTGTAACAAAGTGTTGTTTATGAGTTCAGAAGAAAATAAAGACTTCCCTGCTGTGGGAT
TGAAAACCAAAGAAGGCAGAGATCAACTATACTGGAAAACAATTAAAGCTTTTCAGTATGTTCATGAACATTATTTAGAA
GATGCTGATTGGTTTTTGAAAGCAGATGATGACACGTATGTCATACTAGACAATTTGAGGTGGCTTCTTTCAAAATACGA
CCCTGAAGAACCCATTTACTTTGGGAGGAGATTTAAGCCTTATGTAAAGCAGGGCTACATGAGTGGAGGAGCAGGATATG
TACTAAGCAAAGAAGCCTTGAAAAGATTTGTTGACGCATTTAAAACAGACAAGTGTACACATAGTTCCTCCATTGAAGAC
TTAGCACTGGGGAGATGCATGGAAATTATGAATGTAGAAGCAGGAGATTCCAGAGATACCATTGGAAAAGAAACTTTTCA
TCCCTTTGTGCCAGAACACCATTTAATTAAAGGTTATCTACCTAGAACGTTTTGGTACTGGAATTACAACTATTATCCTC
CTGTAGAGGGTCCTGGTTGCTGTTCTGATCTTGCAGTTTCTTTTCACTATGTTGATTCTACAACCATGTATGAGTTAGAA
TACCTCGTTTATCATCTTCGTCCATATGGTTATTTATACAGATATCAACCTACCTTACCTGAACATATACTAAAGGAAAT
TAGTCAAGCAAACAAAAATGAAGATACAAAAGTGAAGTTAGGAAATCCTTGA
ATGGCCTCTAAATCCTGGCTGAATTTTTTAACCTTCCTCTGTGGATCAGCAATAGGATTTCTTTTATGTTCTCAGCTATT
TAGTATTTTGTTGGGAGAAAAGGGTGACACCCAGCCTAATGTTCTTCATAATGATCCTCATGCAAGGCATTCAGATGATA
ATGGACAGAATCATCTAGAAGGACAAATGAACTTCAATGCAGATTCTAGCCAACATAAAGATGAGAACACAGACATTGCT
GAAAACCTCTATCACAAAGTTAGAATTCTTTGCTGGGTTATGACCGGCCCTCAAAACCTAGAGAAAAAGGCCAAACACGT
CAAAGCTACTTGGGCCCAGCGTTGTAACAAAGTGTTGTTTATGAGTTCAGAAGAAAATAAAGACTTCCCTGCTGTGGGAT
TGAAAACCAAAGAAGGCAGAGATCAACTATACTGGAAAACAATTAAAGCTTTTCAGTATGTTCATGAACATTATTTAGAA
GATGCTGATTGGTTTTTGAAAGCAGATGATGACACGTATGTCATACTAGACAATTTGAGGTGGCTTCTTTCAAAATACGA
CCCTGAAGAACCCATTTACTTTGGGAGGAGATTTAAGCCTTATGTAAAGCAGGGCTACATGAGTGGAGGAGCAGGATATG
TACTAAGCAAAGAAGCCTTGAAAAGATTTGTTGACGCATTTAAAACAGACAAGTGTACACATAGTTCCTCCATTGAAGAC
TTAGCACTGGGGAGATGCATGGAAATTATGAATGTAGAAGCAGGAGATTCCAGAGATACCATTGGAAAAGAAACTTTTCA
TCCCTTTGTGCCAGAACACCATTTAATTAAAGGTTATCTACCTAGAACGTTTTGGTACTGGAATTACAACTATTATCCTC
CTGTAGAGGGTCCTGGTTGCTGTTCTGATCTTGCAGTTTCTTTTCACTATGTTGATTCTACAACCATGTATGAGTTAGAA
TACCTCGTTTATCATCTTCGTCCATATGGTTATTTATACAGATATCAACCTACCTTACCTGAACATATACTAAAGGAAAT
TAGTCAAGCAAACAAAAATGAAGATACAAAAGTGAAGTTAGGAAATCCTTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 3 .52 RPM |
| SRP007412_cerebellum | 3 .01 RPM |
| SRP007412_heart | 4 .84 RPM |
| SRP007412_kidney | 10 .41 RPM |
| SRP007412_liver | 3 .11 RPM |
| SRP007412_testis | 2 .53 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Choloepus hoffmanni | ENSCHOG00000000225 | ortholog_one2one | 2 retrogenes | |
| Dasypus novemcinctus | ENSDNOG00000017353 | ortholog_one2one | 2 retrogenes | |
| Homo sapiens | ENSG00000106392 | ortholog_one2one | 2 retrogenes | |
| Loxodonta africana | ENSLAFG00000000063 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000014789 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000016338 | ortholog_one2one | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000026002 | ortholog_one2many | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000012847 | ortholog_one2one | 1 retrogene | |
| Petromyzon marinus | ENSPMAG00000001562 | ortholog_one2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_2266 | 87.70 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ptro_2755 | 60.00 | 85.40 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPTRG00000018925 retrocopies