Parental gene:

C1GALT1, ENSPTRG00000018925

Aliases:None
Description:None
Organism:Chimpanzee (Pan troglodytes)
Coordinates:7:5851299..5861386(+)


>ENSPTRG00000018925
ATGGCCTCTAAATCCTGGCTGAATTTTTTAACCTTCCTCTGTGGATCAGCAATAGGATTTCTTTTATGTTCTCAGCTATT
TAGTATTTTGTTGGGAGAAAAGGGTGACACCCAGCCTAATGTTCTTCATAATGATCCTCATGCAAGGCATTCAGATGATA
ATGGACAGAATCATCTAGAAGGACAAATGAACTTCAATGCAGATTCTAGCCAACATAAAGATGAGAACACAGACATTGCT
GAAAACCTCTATCACAAAGTTAGAATTCTTTGCTGGGTTATGACCGGCCCTCAAAACCTAGAGAAAAAGGCCAAACACGT
CAAAGCTACTTGGGCCCAGCGTTGTAACAAAGTGTTGTTTATGAGTTCAGAAGAAAATAAAGACTTCCCTGCTGTGGGAT
TGAAAACCAAAGAAGGCAGAGATCAACTATACTGGAAAACAATTAAAGCTTTTCAGTATGTTCATGAACATTATTTAGAA
GATGCTGATTGGTTTTTGAAAGCAGATGATGACACGTATGTCATACTAGACAATTTGAGGTGGCTTCTTTCAAAATACGA
CCCTGAAGAACCCATTTACTTTGGGAGGAGATTTAAGCCTTATGTAAAGCAGGGCTACATGAGTGGAGGAGCAGGATATG
TACTAAGCAAAGAAGCCTTGAAAAGATTTGTTGACGCATTTAAAACAGACAAGTGTACACATAGTTCCTCCATTGAAGAC
TTAGCACTGGGGAGATGCATGGAAATTATGAATGTAGAAGCAGGAGATTCCAGAGATACCATTGGAAAAGAAACTTTTCA
TCCCTTTGTGCCAGAACACCATTTAATTAAAGGTTATCTACCTAGAACGTTTTGGTACTGGAATTACAACTATTATCCTC
CTGTAGAGGGTCCTGGTTGCTGTTCTGATCTTGCAGTTTCTTTTCACTATGTTGATTCTACAACCATGTATGAGTTAGAA
TACCTCGTTTATCATCTTCGTCCATATGGTTATTTATACAGATATCAACCTACCTTACCTGAACATATACTAAAGGAAAT
TAGTCAAGCAAACAAAAATGAAGATACAAAAGTGAAGTTAGGAAATCCTTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 3 .52 RPM
SRP007412_cerebellum 3 .01 RPM
SRP007412_heart 4 .84 RPM
SRP007412_kidney 10 .41 RPM
SRP007412_liver 3 .11 RPM
SRP007412_testis 2 .53 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000000225 ortholog_one2one 2 retrogenes
retro_chof_1782, retro_chof_2581,
Dasypus novemcinctus ENSDNOG00000017353 ortholog_one2one 2 retrogenes
retro_dnov_1801, retro_dnov_1905,
Homo sapiens ENSG00000106392 ortholog_one2one 2 retrogenes
retro_hsap_3177, retro_hsap_4065,
Loxodonta africana ENSLAFG00000000063 ortholog_one2one 1 retrogene
retro_lafr_1166,
Myotis lucifugus ENSMLUG00000014789 ortholog_one2one 1 retrogene
retro_mluc_1310,
Macaca mulatta ENSMMUG00000016338 ortholog_one2one 1 retrogene
retro_mmul_2009,
Oryctolagus cuniculus ENSOCUG00000026002 ortholog_one2many 1 retrogene
retro_ocun_216,
Otolemur garnettii ENSOGAG00000012847 ortholog_one2one 1 retrogene
retro_ogar_855,
Petromyzon marinus ENSPMAG00000001562 ortholog_one2many 1 retrogene
retro_pmar_2,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_2266 87.70 100.00
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2. retro_ptro_2755 60.00 85.40
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Download FASTA sequences of all ENSPTRG00000018925 retrocopies