RetrogeneDB ID: | retro_rnor_1736 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 20:35983023..35983500(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000026980 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Prdx1 | ||
Ensembl ID: | ENSRNOG00000017194 | ||
Aliases: | Prdx1, Hbp23 | ||
Description: | Peroxiredoxin-1 [Source:UniProtKB/Swiss-Prot;Acc:Q63716] |
Percent Identity: | 71.95 % |
Parental protein coverage: | 81.41 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | YVVFFFYPLDFTFVCPTEIIA-FSDRAEEFKKLNCQVIGASVDSHFCHLAWINTPKKQGGLG-PMNIPLV |
YVVF.FYPLDF.FVCP.EI...FS.RAEEFKK.N.QVIGASVDS.F.HL..INTPKKQGGLG.P...P.. | |
Retrocopy | YVVFLFYPLDFSFVCPMEIMS<FSNRAEEFKKRNSQVIGASVDSYFHHLSQINTPKKQGGLG>PRTFPWY |
Parental | SDPKRTIAQDYGVLKADEGISFRGLFIIDDKGILRQITINDLPVGRSVDEILRLVQAFQFTDKHGEVCPA |
..P.............DEGIS.R.LFIIDDKGIL..I.INDLPVGRSVDEI.RLVQAFQFT.KHGEVCPA | |
Retrocopy | QIPSVPLLR---IMESDEGISLRVLFIIDDKGILYHIMINDLPVGRSVDEICRLVQAFQFTEKHGEVCPA |
Parental | GWKPGSDTIKPDVNKSKEYFSKQK |
.WKPG.DTIKPD.N..KEYFSKQK | |
Retrocopy | SWKPGNDTIKPDINMNKEYFSKQK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 23 .01 RPM |
SRP017611_kidney | 0 .00 RPM | 179 .55 RPM |
SRP017611_liver | 0 .00 RPM | 185 .37 RPM |