RetrogeneDB ID: | retro_ptro_2874 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 9:13202488..13202896(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PRDX1 | ||
Ensembl ID: | ENSPTRG00000000675 | ||
Aliases: | None | ||
Description: | peroxiredoxin 1 [Source:HGNC Symbol;Acc:9352] |
Percent Identity: | 87.5 % |
Parental protein coverage: | 68.34 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | EEFKKLNCQVIGASVDSHFCHLAWVNTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLKADEGISFRGLFII |
EEFKK.NCQ.IGASVDSHFC.LAW..TPKKQGGLGP.NIPL.SDPK.TIAQDYG.LKA.EGISFRGLFI. | |
Retrocopy | EEFKKFNCQLIGASVDSHFCQLAWIHTPKKQGGLGPRNIPLASDPKCTIAQDYGILKAEEGISFRGLFIV |
Parental | DDKGILRQITVNDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPGSDTIKPDVQKSKEYFSKQK |
DD.GIL.QITVNDLPV..SVDETLRLVQAFQFTDKH.EVCPA.WKPGSDTIKPDVQKSKEYFSKQK | |
Retrocopy | DDMGILWQITVNDLPVDCSVDETLRLVQAFQFTDKHREVCPASWKPGSDTIKPDVQKSKEYFSKQK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .13 RPM | 126 .32 RPM |
SRP007412_cerebellum | 0 .00 RPM | 107 .72 RPM |
SRP007412_heart | 0 .03 RPM | 131 .36 RPM |
SRP007412_kidney | 0 .08 RPM | 337 .31 RPM |
SRP007412_liver | 0 .07 RPM | 334 .28 RPM |
SRP007412_testis | 0 .00 RPM | 58 .38 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4230 |
Gorilla gorilla | retro_ggor_2833 |