Parental gene:

RPLP1, ENSSHAG00000014818

Aliases:None
Description:ribosomal protein, large, P1 [Source:HGNC Symbol;Acc:10372]
Organism:Tasmanian devil (Sarcophilus harrisii)
Coordinates:GL834488.1:1592255..1594317(-)


>ENSSHAG00000014818
ATGGCCTCCGTCTCCGAGCTCGCCTGCATCTACTCGGCCCTCATCCTGCACGACGATGAGGTCACGGTCACGGAGGATAA
AATCAATGCCCTCATTAAAGCAGCAGGTGTAAATGTTGAACCTTTCTGGCCTGGCTTATTTGCAAAGGCCCTGGCCAACA
TTGACATCGGAAGTCTCATATGCAACATAGGAGTTGGTGGAGCCCCCCCGCCAGCTGGTGCTGCTCCTACAGGGGGTGCT
GCCCCTGCTGCTGGTGCTGCTCCTGCTGAAGAGAAGAAAGAGGAAGTTAAGAAAGAAGAATCTGAGGAATCAGATGATGA
CATGGGCTTTGGTCTCTTTGACTAG

Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000014251 possible_ortholog 20 retrogenes
Bos taurus ENSBTAG00000018320 possible_ortholog 4 retrogenes
Choloepus hoffmanni ENSCHOG00000005944 possible_ortholog 10 retrogenes
Callithrix jacchus ENSCJAG00000032919 possible_ortholog 19 retrogenes
Cavia porcellus ENSCPOG00000004321 possible_ortholog 6 retrogenes
Dasypus novemcinctus ENSDNOG00000014224 possible_ortholog 26 retrogenes
Equus caballus ENSECAG00000008542 possible_ortholog 4 retrogenes
Felis catus ENSFCAG00000032037 possible_ortholog 23 retrogenes
Gorilla gorilla ENSGGOG00000003980 possible_ortholog 13 retrogenes
Latimeria chalumnae ENSLACG00000012630 ortholog_one2many 1 retrogene
Loxodonta africana ENSLAFG00000032060 possible_ortholog 3 retrogenes
Macropus eugenii ENSMEUG00000015277 ortholog_one2one 6 retrogenes
Macropus eugenii ENSMEUG00000015282 possible_ortholog 2 retrogenes
Myotis lucifugus ENSMLUG00000010542 possible_ortholog 33 retrogenes
Macaca mulatta ENSMMUG00000014888 possible_ortholog 7 retrogenes
Monodelphis domestica ENSMODG00000009209 ortholog_one2one 1 retrogene
Monodelphis domestica ENSMODG00000009218 possible_ortholog 4 retrogenes
Mustela putorius furo ENSMPUG00000000204 possible_ortholog 13 retrogenes
Mustela putorius furo ENSMPUG00000017096 possible_ortholog 2 retrogenes
Mus musculus ENSMUSG00000007892 possible_ortholog 6 retrogenes
Oryctolagus cuniculus ENSOCUG00000015087 possible_ortholog 8 retrogenes
Pongo abelii ENSPPYG00000006601 possible_ortholog 5 retrogenes
Pan troglodytes ENSPTRG00000007228 possible_ortholog 1 retrogene
Rattus norvegicus ENSRNOG00000011955 possible_ortholog 6 retrogenes
Rattus norvegicus ENSRNOG00000013874 possible_ortholog 3 retrogenes
Sus scrofa ENSSSCG00000004970 possible_ortholog 16 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000027893 possible_ortholog 8 retrogenes
Tarsius syrichta ENSTSYG00000013927 possible_ortholog 1 retrogene
Tursiops truncatus ENSTTRG00000013656 possible_ortholog 20 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_shar_182 65.28 61.40
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2. retro_shar_234 53.39 100.00
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3. retro_shar_449 71.43 54.39
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4. retro_shar_550 77.27 57.02
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5. retro_shar_614 56.10 71.05
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6. retro_shar_742 51.47 57.89
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Download FASTA sequences of all ENSSHAG00000014818 retrocopies