RetrogeneDB ID: | retro_rnor_721 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 10:103290737..103291631(+) | ||
Located in intron of: | ENSRNOG00000045827 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Slc25a5 | ||
Ensembl ID: | ENSRNOG00000039980 | ||
Aliases: | Slc25a5, Ant2 | ||
Description: | ADP/ATP translocase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q09073] |
Percent Identity: | 92.28 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MTDAAVSFAKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQITADKQYKGIIDCVVRIPKEQGVLSF |
MTDAAVSFAK.FLAGGVAAAI.K..VAPI..VKLLLQVQHASKQITADKQYKGI.D.VVRIPKEQGVLSF | |
Retrocopy | MTDAAVSFAKVFLAGGVAAAIFKMVVAPIKCVKLLLQVQHASKQITADKQYKGIMDGVVRIPKEQGVLSF |
Parental | WRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDKRTQFWRYFAGNLASGGAAGATSLCFVYPLDFARTR |
WRGNLA.VIRYFPTQALNFAFKDKYKQIFLGGVDKRTQFWRYFAGNLASGGAAGATSL.FVYPLDFART. | |
Retrocopy | WRGNLASVIRYFPTQALNFAFKDKYKQIFLGGVDKRTQFWRYFAGNLASGGAAGATSLRFVYPLDFARTS |
Parental | LAADVGKAGAEREFKGLGDCLVKIYKSDGIKGLYQGFNVSVQGIIIYRAAYFGIYDTAKGMLPDPKNTHI |
LAADVGKAGAEREFKGLGD.LVKIYKSDGIKGLY.GFNVSVQGIIIY.AAYFGI.DTAKGMLPDPKNTHI | |
Retrocopy | LAADVGKAGAEREFKGLGDYLVKIYKSDGIKGLYHGFNVSVQGIIIYQAAYFGI*DTAKGMLPDPKNTHI |
Parental | FISWMIAQSVTAVAGLTSYPFDTVRRRMMMQSGRKGTDIMYTGTLDCWRKIARDEGGKAFFKGAWSNVLR |
FISWMIAQSVT.VAGLTSYPFDTV.R.MMMQSG.KGTDI..TGTLDCWRKIA.DEGGKAFFKGAWSNVLR | |
Retrocopy | FISWMIAQSVTSVAGLTSYPFDTVPRHMMMQSGHKGTDIVHTGTLDCWRKIAPDEGGKAFFKGAWSNVLR |
Parental | GMGGAFVLVLYDEIKKYT |
GMGGAFVLVLYDEIKK.T | |
Retrocopy | GMGGAFVLVLYDEIKKDT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 107 .56 RPM |
SRP017611_kidney | 0 .00 RPM | 537 .81 RPM |
SRP017611_liver | 0 .00 RPM | 136 .63 RPM |