RetrogeneDB ID: | retro_fcat_1035 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B4:64206471..64206972(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000007057 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 78.49 % |
Parental protein coverage: | 52.48 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | CFVYPLDFARTRLAADVGKAGAEREFRGLGDCLVKIYKSDGIKGLYQGFNVSVQGIIIYRAA-YFGIYDT |
CFVYPLDFA.T.LAADVGKAGAERE..GLGDCLVKIYKSDGIKG.YQGFNVSVQ..IIY.AA.YFG.YD. | |
Retrocopy | CFVYPLDFALTCLAADVGKAGAEREPWGLGDCLVKIYKSDGIKG-YQGFNVSVQATIIY*AA<YFGVYDP |
Parental | A-KGMLPDPKNTHIFISWMIAQSVTAVAGLTSYPFDTVRRRMMMQSGRKGTDIMYTGTLDCWRKIARDEG |
A.KGMLPDP..T.IFI..MI.QSVT.VA.LTS.PFDT....MMMQSG..GTD.MYTG.LDC.RKIA.D.G | |
Retrocopy | A<KGMLPDP*DTYIFIRCMIPQSVTTVAALTSFPFDTLCG*MMMQSGCQGTDLMYTGVLDCQRKIALDKG |
Parental | AKA-FFKGAWSNVLRGMGGAFVLVLYDEIKKF |
AKA.FFKG.WSNVLRGMGG..VLVLYDEIK.F | |
Retrocopy | AKA<FFKGSWSNVLRGMGGTSVLVLYDEIKEF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 47 .52 RPM |
SRP017611_kidney | 0 .00 RPM | 460 .05 RPM |
SRP017611_liver | 0 .00 RPM | 61 .36 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000000143 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000005125 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000008384 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000004900 | 2 retrocopies | |
Felis catus | ENSFCAG00000007057 | 2 retrocopies |
retro_fcat_1035 , retro_fcat_127,
|
Homo sapiens | ENSG00000005022 | 7 retrocopies | |
Gorilla gorilla | ENSGGOG00000014279 | 8 retrocopies | |
Loxodonta africana | ENSLAFG00000029398 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000002757 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000022663 | 6 retrocopies | |
Mus musculus | ENSMUSG00000016319 | 4 retrocopies | |
Nomascus leucogenys | ENSNLEG00000014852 | 7 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000013268 | 11 retrocopies | |
Otolemur garnettii | ENSOGAG00000010008 | 7 retrocopies | |
Pongo abelii | ENSPPYG00000020669 | 5 retrocopies | |
Rattus norvegicus | ENSRNOG00000039980 | 11 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000020438 | 3 retrocopies | |
Tupaia belangeri | ENSTBEG00000006008 | 4 retrocopies |