RetrogeneDB ID: | retro_sscr_485 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 15:3935225..3935618(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSSCG00000028850 | ||
Aliases: | None | ||
Description: | Sus scrofa ribosomal protein L26 (RPL26), mRNA. [Source:RefSeq mRNA;Acc:NM_001243458] |
Percent Identity: | 62.5 % |
Parental protein coverage: | 92.41 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKV |
MK.NPFV..D.S.N.K.HFN.PSHI..KI.....S.ELR.KYNV..M.I..DDE..VV.G.YK.QQ.GKV | |
Retrocopy | MKYNPFVSCDQSENHKNHFNSPSHICTKIV---FSRELREKYNV*TMSI*TDDES*VV*GDYKYQQTGKV |
Parental | VQVYRKKYVIYIERVQREK-ANGTTVHVGIHPSKVVITRLKLDKDRKKILER-KAKSRQVGKEKGK |
VQV.RKK..IY....Q.EK.ANGTTVHVGI.PSKVVITRLK.D...KK.L...KA.S..VG.EKG. | |
Retrocopy | VQVFRKKCIIYPRHMQPEK<ANGTTVHVGIQPSKVVITRLKVDTGGKKDLWM>KARSCKVGREKGQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 676 .53 RPM |
SRP014902_testis | 0 .00 RPM | 767 .35 RPM |
SRP018288_heart | 0 .00 RPM | 547 .76 RPM |
SRP018288_kidney | 0 .00 RPM | 308 .62 RPM |
SRP018288_liver | 0 .00 RPM | 284 .16 RPM |
SRP018288_lung | 0 .00 RPM | 878 .45 RPM |
SRP018856_adipose | 0 .00 RPM | 1432 .76 RPM |
SRP035408_brain | 0 .00 RPM | 1221 .76 RPM |
SRP035408_liver | 0 .00 RPM | 962 .96 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2165 |
Macaca mulatta | retro_mmul_903 |
Equus caballus | retro_ecab_429 |