RetrogeneDB ID: | retro_sscr_427 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 14:9335542..9335886(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSSCG00000028850 | ||
Aliases: | None | ||
Description: | Sus scrofa ribosomal protein L26 (RPL26), mRNA. [Source:RefSeq mRNA;Acc:NM_001243458] |
Percent Identity: | 57.63 % |
Parental protein coverage: | 79.31 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTT-VHVG |
MS..LSKEL..K.NV.SMPI..D..VQVV.GHYK..Q.G.VVQVYRKKY..YI..VQ.EKAN.T...... | |
Retrocopy | MSARLSKELQRKCNVCSMPICEDSKVQVVKGHYKD*QTGNVVQVYRKKYITYIKWVQCEKANSTI>PQQS |
Parental | IHPSKVVITRLKLDKDRKKILERKAKSRQVGKEKGK-YKEE-TIEKMQ |
.H..KVV....K.....KK.LE.KAKS.QV.K.K...Y.EE.T.EKMQ | |
Retrocopy | LHLRKVVYREAK--TGGKKVLECKAKS*QVAKRKAM>YREEVTTEKMQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 676 .53 RPM |
SRP014902_testis | 0 .00 RPM | 767 .35 RPM |
SRP018288_heart | 0 .00 RPM | 547 .76 RPM |
SRP018288_kidney | 0 .00 RPM | 308 .62 RPM |
SRP018288_liver | 0 .00 RPM | 284 .16 RPM |
SRP018288_lung | 0 .00 RPM | 878 .45 RPM |
SRP018856_adipose | 0 .00 RPM | 1432 .76 RPM |
SRP035408_brain | 0 .00 RPM | 1221 .76 RPM |
SRP035408_liver | 0 .00 RPM | 962 .96 RPM |