RetrogeneDB ID: | retro_tbel_1615 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_5252:691722..692226(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS2 | ||
Ensembl ID: | ENSTBEG00000006726 | ||
Aliases: | None | ||
Description: | ribosomal protein S2 [Source:HGNC Symbol;Acc:10404] |
Percent Identity: | 89.29 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | AFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRL |
AFV.IGDY.GHVGLGVKCS.EVAT.IRGAIILAKLSIVPV.RGYWGNKI.KPHTV.CK.TGRCGSVLV.L | |
Retrocopy | AFVTIGDYSGHVGLGVKCSMEVATTIRGAIILAKLSIVPVQRGYWGNKISKPHTVHCKMTGRCGSVLVCL |
Parental | IPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSP |
I.APRGTGIVSAPVPKKLL.MA.IDDCYTSA.GCTATLGNFAKATFDAISKTYSYLTPDLWKET.FTKSP | |
Retrocopy | ISAPRGTGIVSAPVPKKLLLMASIDDCYTSAQGCTATLGNFAKATFDAISKTYSYLTPDLWKETLFTKSP |
Parental | YQEFTDHLVKTHTRVSVQRTQAPAVATT |
YQEFTDHL.K.HTRVSV.RTQ.PAVATT | |
Retrocopy | YQEFTDHLAKNHTRVSVKRTQVPAVATT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |