RetrogeneDB ID: | retro_tbel_1622 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_5278:196346..196849(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS2 | ||
Ensembl ID: | ENSTBEG00000006726 | ||
Aliases: | None | ||
Description: | ribosomal protein S2 [Source:HGNC Symbol;Acc:10404] |
Percent Identity: | 82.84 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | AFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRL |
A.V..G.YNGH.GLG.KCSK.VATAI..AIILAKLSIVPVRRGYWGNKI.KPHTVPCKVTGRCGSVLV.L | |
Retrocopy | ASVSTGEYNGHLGLGMKCSKGVATAI*EAIILAKLSIVPVRRGYWGNKISKPHTVPCKVTGRCGSVLVCL |
Parental | IPAPRGTGIVSAPVPKKLLMM-AGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKS |
IPAPR..G..SAPV.KKLL...AGIDDCYTSA.GCTA..GNFAKATFDAISKTYSYLTPDLWKETVFTKS | |
Retrocopy | IPAPRSIGMISAPVSKKLLLL<AGIDDCYTSAPGCTANVGNFAKATFDAISKTYSYLTPDLWKETVFTKS |
Parental | PYQEFTDHLVKTHTRVSVQRTQAPAVATT |
PYQEF.DH..KTHTRVSV.R.QAPA..TT | |
Retrocopy | PYQEFMDHFIKTHTRVSV*RAQAPAMSTT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |