RetrogeneDB ID:

retro_mmur_1273

Retrocopy
location
Organism:Mouse Lemur (Microcebus murinus)
Coordinates:scaffold_3812:48503..49005(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPS2
Ensembl ID:ENSMICG00000012765
Aliases:None
Description:ribosomal protein S2 [Source:HGNC Symbol;Acc:10404]


Retrocopy-Parental alignment summary:






>retro_mmur_1273
GCATTTGTTGCCATCGGGGACTACAATGGCCACGTCAGTCTAGGTGTTAAGTGCTCCAAGGAGGTAGCCGCTGCCATCCC
GGGGCCATCGTCCTGGCCAGACTCTCCATCGTCCCCGTGCGGAGAGGCTACTGGGGAAACAAGATCGGCAAGCCCCACAC
TGTCCCTTGCAAGGTGACAGGCCGCTGCGGCTGTGTGCTGGTAGGTCTCACCCCTGCCCCTAGAGGAACTGGCATCGTCT
CGGCCCTGTGTCCAAGAAGCTGCTGCTGATGGCTGGTATTGATGGCTGCTACACTTCAGCCAAGGGCTGCACTGCCACCC
TGGGCAACTTTGCAAAGGCCACCTTTGATGCCATCTCCAAGACCTATAGCTATCTGACTTCTGACCTCTGGAAAGAGACA
GTATTCTCCAAGTCTCCCCACCAGGAATTCACCGACCATCTTGTCAAGACCTGCTCCAGAGTCTCCGTGCAGAGGACCCA
GGCTCCAGCTGTGGCTACAACA

ORF - retro_mmur_1273 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 88.82 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalAFVAIGDYNGHVGLGVKCSKEVATAIRG-AIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVR
AFVAIGDYNGHV.LGVKCSKEVA.AI.G.AI.LA.LSIVPVRRGYWGNKIGKPHTVPCKVTGRCG.VLV.
RetrocopyAFVAIGDYNGHVSLGVKCSKEVAAAIPG<AIVLARLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGCVLVG
ParentalLIPAPRGTGIVSA-PVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTK
L.PAPRGTGIVSA.PV.KKLL.MAGID.CYTSA.GCTATLGNFAKATFDAISKTYSYLT.DLWKETVF.K
RetrocopyLTPAPRGTGIVSA<PVSKKLLLMAGIDGCYTSAKGCTATLGNFAKATFDAISKTYSYLTSDLWKETVFSK
ParentalSPYQEFTDHLVKTHTRVSVQRTQAPAVATT
SP.QEFTDHLVKT..RVSVQRTQAPAVATT
RetrocopySPHQEFTDHLVKTCSRVSVQRTQAPAVATT

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Microcebus murinus was not studied using RNA-Seq expression data.
Microcebus murinus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmur_1273 retrocopy.
Microcebus murinus was not studied using FANTOM5 data.
retro_mmur_1273 was not experimentally validated.

Retrocopy orthology:
Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 10 parental genes, and 111 retrocopies.

Species Parental gene accession Retrocopies number
Anolis carolinensis ENSACAG000000025491 retrocopy
Callithrix jacchus ENSCJAG0000001526715 retrocopies
Felis catus ENSFCAG000000291916 retrocopies
Gorilla gorilla ENSGGOG000000093715 retrocopies
Microcebus murinus ENSMICG00000012765 28 retrocopies
Monodelphis domestica ENSMODG000000160771 retrocopy
Nomascus leucogenys ENSNLEG000000088771 retrocopy
Otolemur garnettii ENSOGAG0000001009819 retrocopies
Sarcophilus harrisii ENSSHAG000000152135 retrocopies
Tupaia belangeri ENSTBEG0000000672630 retrocopies



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