RetrogeneDB ID: | retro_tbel_4705 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_98114:119176..119773(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL15 | ||
Ensembl ID: | ENSTBEG00000009843 | ||
Aliases: | None | ||
Description: | ribosomal protein L15 [Source:HGNC Symbol;Acc:10306] |
Percent Identity: | 92.96 % |
Parental protein coverage: | 91.71 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | YIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPV |
YIQELWRKKQSDVMRFLLRVRCWQYRQLS.LHR.P.PT.PDKARRLGYK.KQG.VIYRIRVRR.GRKRPV | |
Retrocopy | YIQELWRKKQSDVMRFLLRVRCWQYRQLSVLHRVPHPTWPDKARRLGYKVKQG*VIYRIRVRRVGRKRPV |
Parental | PKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRN |
PKGATYGKPVHHGVNQLKFARSLQSVAEERAG..CGALRVLNSYWVGEDSTYKFFEVILIDPFHKA.RRN | |
Retrocopy | PKGATYGKPVHHGVNQLKFARSLQSVAEERAGHPCGALRVLNSYWVGEDSTYKFFEVILIDPFHKALRRN |
Parental | PDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKFHHTIGGSRRAAWRRRNTLQLHRYR |
PDTQWITKPVHKHREMRGLTSAGRK.RGLGKGHKFHHTIGGS..AAWRRRNT.QLHRYR | |
Retrocopy | PDTQWITKPVHKHREMRGLTSAGRKCRGLGKGHKFHHTIGGSHLAAWRRRNTYQLHRYR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |