RetrogeneDB ID: | retro_meug_2006 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold78755:9118..9720(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL15 | ||
Ensembl ID: | ENSMEUG00000014522 | ||
Aliases: | None | ||
Description: | ribosomal protein L15 [Source:HGNC Symbol;Acc:10306] |
Percent Identity: | 67.16 % |
Parental protein coverage: | 99.51 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRP-DKARRLGYKAKQGYVIYRIRVRRG |
M..Y.YIQ.LWRKKQS.V...LL.V.CWQY......H..P.P..P..KA.RLGYKAKQ..VIY.I.VR.G | |
Retrocopy | MESYRYIQGLWRKKQSHVIQCLLCVCCWQYCVPCTEH--PGPPNP<NKACRLGYKAKQS*VIYHIHVRHG |
Parental | GRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFH |
....PVPKGATYGKPVHH.V.QLK....LQ..AEE.AG.HCGAL.VLNSYWVGEDSTY.FFEVI..DPFH | |
Retrocopy | E*NCPVPKGATYGKPVHHAVSQLKLVKCLQFGAEEHAGHHCGALIVLNSYWVGEDSTYRFFEVIILDPFH |
Parental | KAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKFHHTIGGSRRAAWRRRNTLQLHRY |
K....N..TQWIT.PVHKHREM...TSAG.KS..LGKGHKFHHTIGGS.....RR.NTLQLH.Y | |
Retrocopy | KVMIQNLNTQWITNPVHKHREMFRFTSAGQKSWDLGKGHKFHHTIGGSHYTTCRRHNTLQLH*Y |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |