RetrogeneDB ID: | retro_rnor_1685 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 2:217684202..217684814(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl15 | ||
Ensembl ID: | ENSRNOG00000008140 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L15 [Source:UniProtKB/Swiss-Prot;Acc:P61314] |
Percent Identity: | 90.69 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGG |
.GAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAP.PTRPDKA.RL.Y.AKQGYVIYRIRVRRGG | |
Retrocopy | LGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPCPTRPDKA*RLRYTAKQGYVIYRIRVRRGG |
Parental | RKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHK |
.KRPVPKGATYGK.VHHG.....FARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFF.VI.IDPFHK | |
Retrocopy | CKRPVPKGATYGKTVHHGIKFQEFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFF*VIFIDPFHK |
Parental | AIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKFHHTIGGSRRAAWRRRNTLQLHRYR |
AIRRNPDTQWITKPVHKHR.MRGLTSAGRKS.GLGKGHKFHHTIG.SR.AAWRRRNTL.LHRYR | |
Retrocopy | AIRRNPDTQWITKPVHKHRKMRGLTSAGRKSCGLGKGHKFHHTIGRSRCAAWRRRNTLRLHRYR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 65 .86 RPM |
SRP017611_kidney | 0 .00 RPM | 79 .83 RPM |
SRP017611_liver | 0 .00 RPM | 65 .62 RPM |