RetrogeneDB ID:

retro_etel_943

Retrocopy
location
Organism:Lesser hedgehog tenrec (Echinops telfairi)
Coordinates:scaffold_189087:6672..7099(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPL15
Ensembl ID:ENSETEG00000015044
Aliases:None
Description:ribosomal protein L15 [Source:HGNC Symbol;Acc:10306]


Retrocopy-Parental alignment summary:






>retro_etel_943
ATGCACTTTATCTAGCGCTTCACCTGTTGACAGGACCACTACCTCCTGATGTTGCAGCGGTAGCCCAGCCCCACTTGTCA
GACAAGGCACACTGAGTGGGTGCCAAAGTCAAGGAAGGTTATGGCATCTATCAGAATCGCATGCGTATTGGTGGCCACAA
AAGCCCAGTACCCTAAGGTGCATCTTTGGCAAGACTCTGTTCTCTACGGTTTTAACCAGCTGAAGTTCGCTCAGAGCCTT
CAGCCAGCTGCTAAGGAGCCAGCAGCTGGACGCCACTTTGGGGCTCTGAGAGCCCTGAAACCTTACTGGGTTGGTGAAGA
ATCCACACACAAGTTTGCTTGAAGCTCTCCTCCTTGATCCGTTCCCTAAAGCTATCAGAAGAAAGTCTGAGACCACGTGG
TTCACTGAGCCTGCCCTAAAGCACAGG

ORF - retro_etel_943 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 54.48 %
Parental protein coverage: 80.57 %
Number of stop codons detected: 5
Number of frameshifts detected 3


Retrocopy - Parental Gene Alignment:

ParentalMRFLLRVRCWQYRQLSALHRAPRPT-RPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGK-PVH
M.F..R..C.Q...L..L.R.P.PT...DKA...G.K.K.GY.IY..R.R.GG.K.PVP.GA......V.
RetrocopyMHFI*RFTC*QDHYLLMLQR*PSPT<LSDKAH*VGAKVKEGYGIYQNRMRIGGHKSPVP*GASLAR>SVL
ParentalHGVNQLKFARSLQSVAEE-RAGRHCGALRVLNSYWVGEDSTYKF-FEVILIDPFHKAIRRNPDTQWITKP
.G.NQLKFA.SLQ..A.E..AGRH.GALR.L..YWVGE.ST.KF..E..L.DPF.KAIRR...T.W.T.P
RetrocopyYGFNQLKFAQSLQPAAKEPAAGRHFGALRALKPYWVGEESTHKF>LEALLLDPFPKAIRRKSETTWFTEP
ParentalVHKHR
..KHR
RetrocopyALKHR

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Echinops telfairi was not studied using RNA-Seq expression data.
Echinops telfairi was not studied using ChIP-Seq data.
Echinops telfairi was not studied using EST data.
Echinops telfairi was not studied using FANTOM5 data.
retro_etel_943 was not experimentally validated.

Retrocopy orthology:
Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 13 parental genes, and 99 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000330802 retrocopies
Erinaceus europaeus ENSEEUG000000112865 retrocopies
Echinops telfairi ENSETEG00000015044 4 retrocopies
Macropus eugenii ENSMEUG000000145223 retrocopies
Macaca mulatta ENSMMUG000000063531 retrocopy
Mustela putorius furoENSMPUG000000121487 retrocopies
Mus musculus ENSMUSG000000124052 retrocopies
Otolemur garnettii ENSOGAG0000001305613 retrocopies
Procavia capensis ENSPCAG000000119951 retrocopy
Rattus norvegicus ENSRNOG0000000814017 retrocopies
Sus scrofa ENSSSCG000000280795 retrocopies
Tupaia belangeri ENSTBEG0000000984334 retrocopies
Tursiops truncatus ENSTTRG000000072445 retrocopies



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