RetrogeneDB ID: | retro_rnor_2451 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 7:37462682..37463182(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl15 | ||
Ensembl ID: | ENSRNOG00000008140 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L15 [Source:UniProtKB/Swiss-Prot;Acc:P61314] |
Percent Identity: | 89.29 % |
Parental protein coverage: | 81.86 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | SALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAE |
.AL.RAPRPTRPD..RRLGYKAKQGYVIYRIRVRRGG.KRPV.KGATYGKPVHHGVN.LKFARSLQSVAE | |
Retrocopy | AALPRAPRPTRPD*VRRLGYKAKQGYVIYRIRVRRGGHKRPVSKGATYGKPVHHGVN*LKFARSLQSVAE |
Parental | ERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRG |
ERAGRHCGALRVLNSYWVGEDSTYKFFEV.LIDPFHKAIRRNPDT.W.TK.VHKHREMRGLTSAG.KSRG | |
Retrocopy | ERAGRHCGALRVLNSYWVGEDSTYKFFEVNLIDPFHKAIRRNPDT*WMTKLVHKHREMRGLTSAGLKSRG |
Parental | LGKGHKFHHTIGGS-RRAAWRRRNTLQL |
LGKGHKFHHT.GGS..RAA.RR.NTL.L | |
Retrocopy | LGKGHKFHHTVGGS<SRAA*RRHNTLRL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 65 .86 RPM |
SRP017611_kidney | 0 .00 RPM | 79 .83 RPM |
SRP017611_liver | 0 .00 RPM | 65 .62 RPM |