Parental gene:

Rpl15, ENSRNOG00000008140

Aliases:None
Description:60S ribosomal protein L15 [Source:UniProtKB/Swiss-Prot;Acc:P61314]
Organism:Rat (Rattus norvegicus)
Coordinates:15:12250805..12252870(+)


>ENSRNOG00000008140
ATGGGTGCATACAAATACATCCAGGAGCTGTGGAGGAAGAAGCAGTCCGACGTGATGCGCTTCCTTCTAAGGGTCCGCTG
CTGGCAGTACCGCCAGCTCTCTGCGCTGCACAGGGCTCCCCGCCCCACCCGGCCTGATAAGGCGCGAAGGCTGGGATACA
AGGCTAAGCAAGGTTATGTCATTTACAGGATCCGTGTCCGCCGCGGTGGTCGCAAGCGCCCAGTTCCTAAGGGTGCAACC
TACGGCAAGCCTGTCCACCACGGTGTTAACCAGCTGAAGTTTGCCCGAAGCCTTCAGTCTGTTGCTGAGGAGAGAGCTGG
GCGCCATTGTGGAGCTTTGAGAGTCCTGAATTCCTACTGGGTTGGTGAAGATTCCACATATAAATTTTTTGAGGTTATCC
TCATTGATCCATTCCATAAAGCTATCAGAAGAAATCCCGACACCCAATGGATTACCAAACCAGTCCACAAGCACAGGGAG
ATGCGTGGGCTGACATCTGCTGGCCGCAAGAGCCGTGGCCTTGGAAAGGGCCACAAGTTCCACCACACCATTGGTGGGTC
TCGCCGTGCAGCCTGGAGAAGGCGCAACACTCTTCAGCTCCACCGTTACCGCTAA

Library Parental gene expression (RPM)
SRP017611_brain 65 .86 RPM
SRP017611_kidney 79 .83 RPM
SRP017611_liver 65 .62 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000033080 possible_ortholog 2 retrogenes
retro_btau_152, retro_btau_201,
Canis familiaris ENSCAFG00000005764 ortholog_one2one 5 retrogenes
retro_cfam_1003, retro_cfam_1159, retro_cfam_1630, retro_cfam_572, retro_cfam_656,
Cavia porcellus ENSCPOG00000002253 possible_ortholog 4 retrogenes
retro_cpor_620, retro_cpor_807, retro_cpor_900, retro_cpor_978,
Erinaceus europaeus ENSEEUG00000011286 possible_ortholog 5 retrogenes
retro_eeur_200, retro_eeur_28, retro_eeur_400, retro_eeur_685, retro_eeur_694,
Echinops telfairi ENSETEG00000015044 possible_ortholog 4 retrogenes
retro_etel_1438, retro_etel_431, retro_etel_658, retro_etel_943,
Felis catus ENSFCAG00000026237 possible_ortholog 6 retrogenes
retro_fcat_1820, retro_fcat_285, retro_fcat_306, retro_fcat_610, retro_fcat_930, retro_fcat_985,
Homo sapiens ENSG00000174748 ortholog_one2many 14 retrogenes
retro_hsap_1294, retro_hsap_1804, retro_hsap_2160, retro_hsap_2870, retro_hsap_2927, retro_hsap_3095, retro_hsap_3422, retro_hsap_3661, retro_hsap_3792, retro_hsap_592, retro_hsap_631, retro_hsap_791, retro_hsap_930, retro_hsap_957,
Gorilla gorilla ENSGGOG00000024274 possible_ortholog 13 retrogenes
retro_ggor_1327, retro_ggor_1611, retro_ggor_1716, retro_ggor_1989, retro_ggor_2029, retro_ggor_2125, retro_ggor_2314, retro_ggor_2473, retro_ggor_39, retro_ggor_524, retro_ggor_552, retro_ggor_654, retro_ggor_771,
Loxodonta africana ENSLAFG00000004155 possible_ortholog 1 retrogene
retro_lafr_677,
Macropus eugenii ENSMEUG00000014522 possible_ortholog 3 retrogenes
retro_meug_1678, retro_meug_2006, retro_meug_2112,
Myotis lucifugus ENSMLUG00000013809 possible_ortholog 15 retrogenes
retro_mluc_1357, retro_mluc_1709, retro_mluc_1720, retro_mluc_2052, retro_mluc_2142, retro_mluc_2454, retro_mluc_425, retro_mluc_623, retro_mluc_701, retro_mluc_714, retro_mluc_748, retro_mluc_749, retro_mluc_907, retro_mluc_943, retro_mluc_99,
Macaca mulatta ENSMMUG00000006353 possible_ortholog 1 retrogene
retro_mmul_209,
Monodelphis domestica ENSMODG00000014880 ortholog_one2many 3 retrogenes
retro_mdom_1315, retro_mdom_1803, retro_mdom_918,
Mustela putorius furo ENSMPUG00000012148 ortholog_one2one 7 retrogenes
retro_mputfur_1011, retro_mputfur_1252, retro_mputfur_1291, retro_mputfur_314, retro_mputfur_346, retro_mputfur_658, retro_mputfur_669,
Mus musculus ENSMUSG00000012405 possible_ortholog 2 retrogenes
retro_mmus_118, retro_mmus_8,
Nomascus leucogenys ENSNLEG00000003580 ortholog_one2one 1 retrogene
retro_nleu_80,
Oryctolagus cuniculus ENSOCUG00000010961 possible_ortholog 2 retrogenes
retro_ocun_215, retro_ocun_228,
Otolemur garnettii ENSOGAG00000013056 ortholog_one2one 13 retrogenes
retro_ogar_1066, retro_ogar_1129, retro_ogar_1182, retro_ogar_1453, retro_ogar_1483, retro_ogar_1629, retro_ogar_1809, retro_ogar_2378, retro_ogar_270, retro_ogar_3058, retro_ogar_3096, retro_ogar_3349, retro_ogar_903,
Procavia capensis ENSPCAG00000011995 possible_ortholog 1 retrogene
retro_pcap_265,
Sus scrofa ENSSSCG00000028079 ortholog_one2one 5 retrogenes
retro_sscr_1219, retro_sscr_1225, retro_sscr_448, retro_sscr_968, retro_sscr_997,
Ictidomys tridecemlineatus ENSSTOG00000011153 possible_ortholog 4 retrogenes
retro_itri_1445, retro_itri_1838, retro_itri_479, retro_itri_785,
Tupaia belangeri ENSTBEG00000009843 possible_ortholog 34 retrogenes
retro_tbel_1031, retro_tbel_1072, retro_tbel_1322, retro_tbel_1346, retro_tbel_1363, retro_tbel_1524, retro_tbel_1668, retro_tbel_1931, retro_tbel_1980, retro_tbel_2035, retro_tbel_2212, retro_tbel_2270, retro_tbel_2453, retro_tbel_2634, retro_tbel_2818, retro_tbel_3196, retro_tbel_3208, retro_tbel_3387, retro_tbel_3449, retro_tbel_352, retro_tbel_3936, retro_tbel_4079, retro_tbel_4417, retro_tbel_4433, retro_tbel_4477, retro_tbel_4564, retro_tbel_4705, retro_tbel_476, retro_tbel_555, retro_tbel_727, retro_tbel_746, retro_tbel_84, retro_tbel_929, retro_tbel_992,
Tursiops truncatus ENSTTRG00000007244 ortholog_one2many 5 retrogenes
retro_ttru_1305, retro_ttru_1358, retro_ttru_280, retro_ttru_920, retro_ttru_987,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_66 91.18 100.00
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2. retro_rnor_428 63.64 63.24
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3. retro_rnor_710 95.87 59.31
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4. retro_rnor_844 94.12 75.00
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5. retro_rnor_1046 80.68 85.78
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6. retro_rnor_1409 80.10 93.14
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7. retro_rnor_1497 84.39 100.00
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8. retro_rnor_1685 90.69 100.00
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9. retro_rnor_1690 76.85 52.45
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10. retro_rnor_1785 75.66 73.04
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11. retro_rnor_2042 50.88 82.35
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12. retro_rnor_2249 85.99 100.00
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13. retro_rnor_2313 81.40 83.82
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14. retro_rnor_2451 89.29 81.86
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15. retro_rnor_2473 93.14 100.00
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16. retro_rnor_2786 80.68 100.00
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17. retro_rnor_2997 77.02 78.43
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Download FASTA sequences of all ENSRNOG00000008140 retrocopies