RetrogeneDB ID: | retro_rnor_1690 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 2:224930537..224930854(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl15 | ||
Ensembl ID: | ENSRNOG00000008140 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L15 [Source:UniProtKB/Swiss-Prot;Acc:P61314] |
Percent Identity: | 76.85 % |
Parental protein coverage: | 52.45 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | RKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRV-RRGGRKRPVPKGAT |
.K.QSDV..FLLRVRCWQ..QLS..HRAP.PT..DKA..LGY..K.GYVIYRI...R.G.RK.PVPKGAT | |
Retrocopy | KKQQSDVVCFLLRVRCWQRGQLSVQHRAPCPTQLDKAPWLGYRGKHGYVIYRIHA<RGG-RKHPVPKGAT |
Parental | YGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNS |
YGKPV.HGVNQLKFARSLQSVAEERAGRHCG..RVLNS | |
Retrocopy | YGKPVQHGVNQLKFARSLQSVAEERAGRHCGVVRVLNS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .14 RPM | 65 .86 RPM |
SRP017611_kidney | 0 .00 RPM | 79 .83 RPM |
SRP017611_liver | 0 .00 RPM | 65 .62 RPM |