RetrogeneDB ID: | retro_tsyr_1029 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_280281:199..729(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSTSYG00000005812 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 77.35 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | NLLLQKWKQSQKRRRERINLQTKKCKQ-KGKGERRESRLKWLTKKLKKSYLQKMEKLKP-RRIQPLMKQE |
NLLLQKWKQSQKRRRERINLQTKKCKQ.KGK.............K.K..........K..RR.QPLMKQE | |
Retrocopy | NLLLQKWKQSQKRRRERINLQTKKCKQ<KGKRGVKGKQAEVANQKTKEELPAENGETKT<RRTQPLMKQE |
Parental | RKKPSLNNHIPCLISGPCLPSCTIQRNIFINYFVNASFLVALETFLRRRESHLIPFFKCKCFFLRGEIIR |
.KKP....HIPCLISGPCLPSCTIQRNIFINYFVNASFLVALETFLRRRESHLIPF.KCKC...RG.II. | |
Retrocopy | KKKPE*C-HIPCLISGPCLPSCTIQRNIFINYFVNASFLVALETFLRRRESHLIPFLKCKCXXXRGDIIH |
Parental | WLFIFWYNQKIVWDIELQEALTVLSISLTFHRW-GVSFYIL |
WLFIFWYNQKIVWDIELQEA.TVLSISLTFHRW.GVSFYIL | |
Retrocopy | WLFIFWYNQKIVWDIELQEASTVLSISLTFHRW>GVSFYIL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000005727 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000013672 | 6 retrocopies | |
Otolemur garnettii | ENSOGAG00000033084 | 3 retrocopies | |
Tarsius syrichta | ENSTSYG00000005812 | 15 retrocopies | |
Tursiops truncatus | ENSTTRG00000015372 | 12 retrocopies | |
Vicugna pacos | ENSVPAG00000000013 | 7 retrocopies |