RetrogeneDB ID: | retro_tsyr_310 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | GeneScaffold_7751:39348..39872(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSTSYG00000005812 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 80.33 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 5 |
Parental | NLLLQKWKQSQKRRRERINLQTKK-CKQKGKGERRESRLKWLTKKLKKSYLQKMEKL-KPRRIQPLMKQE |
NLLL.K.K.SQ.R.RERIN.QTKK.CKQKGKGE.RESRLKWLTKKLKK.YL.K.EKL.KPRRIQPLMKQE | |
Retrocopy | NLLLPK*K*SQRR*RERIN-QTKK>CKQKGKGEGRESRLKWLTKKLKKNYLPKTEKL<KPRRIQPLMKQE |
Parental | RKKPSLNN-HIPCLISGPCLPSCTIQRNIFINYFVNASFLVALETFLRRRESHLIPFFKCKCFFLRGEII |
RKKP.L....IPCLISG.CLPS..IQRNIF.NYFVNASFLVALETFLRR.ESHLIPFFKCKC.FLRGEII | |
Retrocopy | RKKPNLSY<YIPCLISGSCLPSYAIQRNIFLNYFVNASFLVALETFLRR-ESHLIPFFKCKCLFLRGEII |
Parental | RWLFIFWYNQKIVWD-IELQEALTVLSISLTFHRW-GVSFYIL |
...FIFWYN.K.V...IEL.E.LTVL.ISLTFHRW.GVSF.IL | |
Retrocopy | -C*FIFWYNKKLVSE>IELWEGLTVLGISLTFHRW<GVSFHIL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000005727 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000013672 | 6 retrocopies | |
Otolemur garnettii | ENSOGAG00000033084 | 3 retrocopies | |
Tarsius syrichta | ENSTSYG00000005812 | 15 retrocopies | |
Tursiops truncatus | ENSTTRG00000015372 | 12 retrocopies | |
Vicugna pacos | ENSVPAG00000000013 | 7 retrocopies |