RetrogeneDB ID: | retro_ttru_1034 | ||
Retrocopylocation | Organism: | Dolphin (Tursiops truncatus) | |
Coordinates: | scaffold_100501:191559..192070(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSTTRG00000015372 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 71.68 % |
Parental protein coverage: | 96.57 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | NRFLQKWKRSHKRRQERINLPTKKCKQKGKGEQRESRLKWLTKRLKKTYLQKTEKLKMRRAQLLMKQERK |
NR.LQKWKRS.KRRQERIN.PTKKC.QKGKGEQRE.RLKWLTKRLKKT.LQK.E.LKMRRAQLLMKQE.K | |
Retrocopy | NRLLQKWKRSQKRRQERINPPTKKCEQKGKGEQRENRLKWLTKRLKKTHLQKMERLKMRRAQLLMKQEGK |
Parental | KPSLINHTPGPISGPCFPSCTIQRNIFIN-YFVNASFLVALETFLK-RKESHLIPFFKCKCFFLRGEIIC |
KPSLIN.T....SG.........R.IF....F....F........K.R.ESHLIPFFKCK..FLRGEIIC | |
Retrocopy | KPSLINITHLVLSGVPVSLLVQSRGIFLS>LFCKCRFFSSSRNIFK>RRESHLIPFFKCKRSFLRGEIIC |
Parental | WLFIFWYNQKI-WDIEW-EALIVLGVSLTFHRW |
WLFIFWYNQKI.WDIE....LIVLGVSLTFHRW | |
Retrocopy | WLFIFWYNQKI>WDIEY>GGLIVLGVSLTFHRW |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000005727 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000013672 | 6 retrocopies | |
Otolemur garnettii | ENSOGAG00000033084 | 3 retrocopies | |
Tarsius syrichta | ENSTSYG00000005812 | 15 retrocopies | |
Tursiops truncatus | ENSTTRG00000015372 | 12 retrocopies |
retro_ttru_1034 , retro_ttru_129, retro_ttru_1511, retro_ttru_1682, retro_ttru_1714, retro_ttru_200, retro_ttru_337, retro_ttru_373, retro_ttru_558, retro_ttru_61, retro_ttru_680, retro_ttru_980,
|
Vicugna pacos | ENSVPAG00000000013 | 7 retrocopies |