RetrogeneDB ID:

retro_ttru_980

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:GeneScaffold_880:129109..129595(-)
Located in intron of:ENSTTRG00000010904
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSTTRG00000015372
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ttru_980
AACCGGCTCCTGCAAAAGTAGAAACGAAGCCAAAAAAGGCGGCAGGAAAGGATAAATCTTCAGACAAAAAAGTGCAAACA
GAAGGGAAAAGGGGAGCAAAGGGAAAACAGGCTGAAGTGGCTAACCAAGACACTAAGACAGACTAACCTGCAGAAAATGG
AGAAGCTAAAAACGAGGAGAGCCCAGCTTCCGATGAAGCAGGAGGGAAAGAAGCCAAGTCTGATTAATATCACCCACCTG
GTCCTATCAGGGGTCCCTGTCTCCCTCCTTGTACAATCCAGAGGAATATTTTTATCAACTATTTTGTAAATGCAGGTTTT
TTAGTAACTAGAAACATTTTTAAAAAGGAGGGAGTCCCACTTCATCCCATTTTTTAAGTGTAAACGCTCTTTTTTAAGAG
CAGCGTTTGCTGGTTGTTTATTTTTTGGTAGAGTCAGAAAATAGTGGGATATTGAATATGGGAGGCTTTGATTGTCTTGG
GTGTCA

ORF - retro_ttru_980 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 61.35 %
Parental protein coverage: 93.14 %
Number of stop codons detected: 6
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalNRFLQKWKRSHKRRQERINLPTKKCKQKGKGEQRESRLKWLTKRLKKTYLQKTEKLKMRRAQLLMKQERK
NR.LQK.KRS.KRRQERINL.TKKCKQKGKGEQRE.RLKWLTK.L..T.LQK.EKLK.RRAQL.MKQE.K
RetrocopyNRLLQK*KRSQKRRQERINLQTKKCKQKGKGEQRENRLKWLTKTLRQTNLQKMEKLKTRRAQLPMKQEGK
ParentalKPSLINHTPGPISGPCFPSCTIQRNIFINYFVNASFLVALETFLKRKESHLIPFFKCKCFFLRGEIICWL
KPSLIN.T....SG.........R.IF............LETFLKR.ESH.IPFFKCK..FLR......L
RetrocopyKPSLINITHLVLSGVPVSLLVQSRGIFLSTIL*MQVF**LETFLKRRESHFIPFFKCKRSFLRAAFAGCL
ParentalFIFWYNQKIWDIEWEALIVLGVS
F.F....K.WDIE...L....VS
RetrocopyF-FGRVRK*WDIEYGRL*LSWVS

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_980 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_980 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 6 parental genes, and 47 retrocopies.

Species Parental gene accession Retrocopies number
Callithrix jacchus ENSCJAG000000057274 retrocopies
Gorilla gorilla ENSGGOG000000136726 retrocopies
Otolemur garnettii ENSOGAG000000330843 retrocopies
Tarsius syrichta ENSTSYG0000000581215 retrocopies
Tursiops truncatus ENSTTRG00000015372 12 retrocopies
Vicugna pacos ENSVPAG000000000137 retrocopies



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