RetrogeneDB ID:

retro_ttru_373

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:GeneScaffold_206:6709..7200(-)
Located in intron of:ENSTTRG00000010117
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSTTRG00000015372
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ttru_373
AACCGGCTCCTGCAAAAGTGGAAACGAAGCCAAAAAAGGCGGCAGGAAAGGATAAATCTTTAGACAAAAACGTGCAAACA
AAAGGGAAAAGGGGAGCAAAGGGAAAAGAGACTGAAGTGGCTAACCAAGAGACTAAAGAAGACGTACCTGCAGAAAACGG
AGAAACTAAAAACGAGGAGAGCCCAGCTTCTGATGAAGCAGGAGAGAAAGAAGCCAAGTCTGATTAATATCACACACCCG
GTCCTATCAGTGGTCCCTGTCTCCCGTCTTGTACAATCCAGAGGAATATTTTTACCAACTGTTTTGTAAATGCAAGTTTT
TTAGTAGCTCTAGAAATATTTTTTAAAAGGAGGGAATCCCACCTCATCCCATTTTTTAAGTGTAAATGCTTTTTTTAAGA
GGTGAAATAATTTGCTGGTTGTTTATTTTTTGGTACAACCAGAAAATAGTGGGATATTGAATATGGGAGGCTTTGATTGT
CTTGGGTGTCA

ORF - retro_ttru_373 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 74.25 %
Parental protein coverage: 93.14 %
Number of stop codons detected: 2
Number of frameshifts detected 4


Retrocopy - Parental Gene Alignment:

ParentalNRFLQKWKRSHKRRQERINLPTKKCKQKGKGEQRESRLKWLTKRLKKTYLQKTEKLKMRRAQLLMKQERK
NR.LQKWKRS.KRRQERINL.TK.CKQKGKGEQRE.RLKWLTKRLKKTYLQKTEKLK.RRAQLLMKQERK
RetrocopyNRLLQKWKRSQKRRQERINL*TKTCKQKGKGEQREKRLKWLTKRLKKTYLQKTEKLKTRRAQLLMKQERK
ParentalKPSLINHTPGPISGPCFPSCTIQRNIFI-NYFVNASF-LVALETFLKRKESHLIPFFKCKCF-FLRGEII
KPSLIN.T....S..........R.IF....F....F.LVALE.F.KR.ESHLIPFFKCKCF.FLRGEII
RetrocopyKPSLINITHPVLSVVPVSRLVQSRGIFL>QLFCKCKF>LVALEIFFKRRESHLIPFFKCKCF<FLRGEII
ParentalCWLFIFWYNQKI-WDIEWEALIVLGVS
CWLFIFWYNQKI.WDIE...L....VS
RetrocopyCWLFIFWYNQKI>WDIEYGRL*LSWVS

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_373 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_373 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 6 parental genes, and 47 retrocopies.

Species Parental gene accession Retrocopies number
Callithrix jacchus ENSCJAG000000057274 retrocopies
Gorilla gorilla ENSGGOG000000136726 retrocopies
Otolemur garnettii ENSOGAG000000330843 retrocopies
Tarsius syrichta ENSTSYG0000000581215 retrocopies
Tursiops truncatus ENSTTRG00000015372 12 retrocopies
Vicugna pacos ENSVPAG000000000137 retrocopies



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