RetrogeneDB ID: | retro_ttru_1714 | ||
Retrocopylocation | Organism: | Dolphin (Tursiops truncatus) | |
Coordinates: | scaffold_87669:48400..48892(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSTTRG00000015372 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 69.88 % |
Parental protein coverage: | 93.14 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | NRFLQKWKRSHKRRQERINLPTKKCKQKGKGEQRESRLKWLTKRLKKTYLQKTEKLKMRRAQLLMKQERK |
NRFLQKWKRS.KRRQERINLPTKKCKQKGKGEQRESRLKWLTKRLKKTYLQK.EKLKMRRAQLLMKQERK | |
Retrocopy | NRFLQKWKRSQKRRQERINLPTKKCKQKGKGEQRESRLKWLTKRLKKTYLQKMEKLKMRRAQLLMKQERK |
Parental | KPSLINHTPGPISGPCFPSCTIQRNIFIN-YFVNASF-LVALETFLKRKESHLIPFFKCKCFFLRGEIIC |
KPSLIN.T....S..........R.IF....F....F.LVALETFLKRKESHLIPFFKCKC......... | |
Retrocopy | KPSLINITHLVLSVVPVSLLVQSRGIFLS>LFCKCKF>LVALETFLKRKESHLIPFFKCKCXXXXXXXXX |
Parental | WLFIFWYNQKI-WDIEWEALIVLGVS |
......YNQKI.WDIE...L....VS | |
Retrocopy | XXXXXXYNQKI>WDIEYGRL*LSWVS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000005727 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000013672 | 6 retrocopies | |
Otolemur garnettii | ENSOGAG00000033084 | 3 retrocopies | |
Tarsius syrichta | ENSTSYG00000005812 | 15 retrocopies | |
Tursiops truncatus | ENSTTRG00000015372 | 12 retrocopies |
retro_ttru_1034, retro_ttru_129, retro_ttru_1511, retro_ttru_1682, retro_ttru_1714 , retro_ttru_200, retro_ttru_337, retro_ttru_373, retro_ttru_558, retro_ttru_61, retro_ttru_680, retro_ttru_980,
|
Vicugna pacos | ENSVPAG00000000013 | 7 retrocopies |