RetrogeneDB ID:

retro_ttru_1830

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:scaffold_93047:40991..41216(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:DNAJC19
Ensembl ID:ENSTTRG00000014700
Aliases:None
Description:DnaJ (Hsp40) homolog, subfamily C, member 19 [Source:HGNC Symbol;Acc:30528]


Retrocopy-Parental alignment summary:






>retro_ttru_1830
GCCTTCAGTGGTGGCTATTACACCTTCAGAGGTGGGTTTGAACCCCAAATGACAAAACAGGAAGCAGCATTAATACTAGA
TGTAAGCCCTAATGCCAATAAAGGAAAGATAAGAGATGCTCATCGACCAATTATGCTTTTAAATCACCCAGACAAGGGAG
GATATCCTTATATAGCAGCCAAAATCAATGAAGCTAAAGATTTACTAGAGGGTCAAACTAAAAAA

ORF - retro_ttru_1830 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 88. %
Parental protein coverage: 62.93 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalAFSGGYY--RGGFEPKMTKREAALILGVSPTANKGKIRDAHRRIMLLNHPDKGGSPYIAAKINEAKDLLE
AFSGGYY..RGGFEP.MTK.EAALIL.VSP.ANKGKIRDAHR.IMLLNHPDKGG.PYIAAKINEAKDLLE
RetrocopyAFSGGYYTFRGGFEPQMTKQEAALILDVSPNANKGKIRDAHRPIMLLNHPDKGGYPYIAAKINEAKDLLE
ParentalGQAKK
GQ.KK
RetrocopyGQTKK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_1830 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_1830 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 21 parental genes, and 104 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000235131 retrocopy
Callithrix jacchus ENSCJAG0000001279510 retrocopies
Cavia porcellus ENSCPOG000000211981 retrocopy
Dasypus novemcinctus ENSDNOG000000190671 retrocopy
Erinaceus europaeus ENSEEUG000000069559 retrocopies
Echinops telfairi ENSETEG000000068977 retrocopies
Ficedula albicollis ENSFALG000000082961 retrocopy
Gallus gallus ENSGALG000000088521 retrocopy
Gorilla gorilla ENSGGOG000000091207 retrocopies
Loxodonta africana ENSLAFG000000019105 retrocopies
Microcebus murinus ENSMICG000000103814 retrocopies
Myotis lucifugus ENSMLUG000000068651 retrocopy
Macaca mulatta ENSMMUG000000121043 retrocopies
Otolemur garnettii ENSOGAG0000000875411 retrocopies
Pongo abelii ENSPPYG000000143282 retrocopies
Sus scrofa ENSSSCG000000117702 retrocopies
Tupaia belangeri ENSTBEG0000001508927 retrocopies
Tarsius syrichta ENSTSYG000000016113 retrocopies
Tursiops truncatus ENSTTRG00000014700 6 retrocopies
Tursiops truncatus ENSTTRG000000155801 retrocopy
Vicugna pacos ENSVPAG000000033871 retrocopy



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