RetrogeneDB - Parental gene ENSEEUG00000006955 details

							
>ENSEEUG00000006955
ATGGCGAGCACAGTGGTAGCAGTTGGACTGACCATTGCAGCTGCAGGATTTGCAGGTCGCTATGTTTTGCAAGCCATGAA

GCATGTGGAGCCTCAAGTAAAACAAGTTTTTCAAAGTCTACCGAAATCTGCCTTCAGTGGTGGCTATTACAGAGGTGGGT

TTGAACCCAAAATGACAAAGCGGGAAGCAGCACTAATACTAGGTGTAAGCCCTACTGCCAACAAAGGGAAAATAAGAGAA

GCTCATCGTCGAATCATGCTTTTAAATCACCCAGATAAAGGAGGATCTCCTTATATAGCAGCCAAAATCAATGAAGCTAA

AGATTTACTAGAAGGTCAAGCTAAAAAATGA

Library	Parental gene expression (RPM)
SRP017611_liver	16 .08 RPM
SRP017611_kidney	29 .82 RPM
SRP017611_brain	11 .44 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Ailuropoda melanoleuca	ENSAMEG00000012255	possible_ortholog	6 retrogenes	retro_amel_1087, retro_amel_155, retro_amel_252, retro_amel_283, retro_amel_744, retro_amel_994,
Bos taurus	ENSBTAG00000023513	possible_ortholog	1 retrogene	retro_btau_127,
Canis familiaris	ENSCAFG00000032714	ortholog_one2one	8 retrogenes	retro_cfam_1256, retro_cfam_1306, retro_cfam_1451, retro_cfam_2015, retro_cfam_346, retro_cfam_389, retro_cfam_741, retro_cfam_819,
Callithrix jacchus	ENSCJAG00000012795	possible_ortholog	10 retrogenes	retro_cjac_1008, retro_cjac_1192, retro_cjac_1364, retro_cjac_1430, retro_cjac_1550, retro_cjac_252, retro_cjac_2609, retro_cjac_2890, retro_cjac_3060, retro_cjac_914,
Cavia porcellus	ENSCPOG00000021198	possible_ortholog	1 retrogene	retro_cpor_126,
Dasypus novemcinctus	ENSDNOG00000019067	possible_ortholog	1 retrogene	retro_dnov_49,
Dipodomys ordii	ENSDORG00000005862	ortholog_one2one	7 retrogenes	retro_dord_232, retro_dord_295, retro_dord_320, retro_dord_53, retro_dord_586, retro_dord_684, retro_dord_794,
Erinaceus europaeus	ENSEEUG00000008785	within_species_paralog	5 retrogenes	retro_eeur_360, retro_eeur_608, retro_eeur_64, retro_eeur_93, retro_eeur_95,
Echinops telfairi	ENSETEG00000006897	ortholog_one2one	7 retrogenes	retro_etel_1071, retro_etel_1222, retro_etel_1559, retro_etel_275, retro_etel_384, retro_etel_81, retro_etel_821,
Ficedula albicollis	ENSFALG00000008296	ortholog_one2many	1 retrogene	retro_falb_28,
Felis catus	ENSFCAG00000010591	possible_ortholog	7 retrogenes	retro_fcat_1250, retro_fcat_1481, retro_fcat_1603, retro_fcat_1837, retro_fcat_475, retro_fcat_511, retro_fcat_982,
Homo sapiens	ENSG00000205981	ortholog_one2one	8 retrogenes	retro_hsap_1330, retro_hsap_2061, retro_hsap_2062, retro_hsap_2349, retro_hsap_3497, retro_hsap_387, retro_hsap_538, retro_hsap_583,
Gallus gallus	ENSGALG00000008852	ortholog_one2many	1 retrogene	retro_ggal_17,
Gorilla gorilla	ENSGGOG00000009120	possible_ortholog	7 retrogenes	retro_ggor_1037, retro_ggor_1483, retro_ggor_1484, retro_ggor_1783, retro_ggor_2365, retro_ggor_491, retro_ggor_517,
Loxodonta africana	ENSLAFG00000001910	possible_ortholog	5 retrogenes	retro_lafr_48, retro_lafr_515, retro_lafr_611, retro_lafr_881, retro_lafr_929,
Microcebus murinus	ENSMICG00000010381	ortholog_one2one	4 retrogenes	retro_mmur_1160, retro_mmur_225, retro_mmur_320, retro_mmur_728,
Myotis lucifugus	ENSMLUG00000006865	possible_ortholog	1 retrogene	retro_mluc_84,
Macaca mulatta	ENSMMUG00000012104	possible_ortholog	3 retrogenes	retro_mmul_2142, retro_mmul_2454, retro_mmul_946,
Mustela putorius furo	ENSMPUG00000002336	possible_ortholog	7 retrogenes	retro_mputfur_1099, retro_mputfur_1652, retro_mputfur_287, retro_mputfur_662, retro_mputfur_841, retro_mputfur_848, retro_mputfur_984,
Mus musculus	ENSMUSG00000027679	possible_ortholog	3 retrogenes	retro_mmus_1446, retro_mmus_3071, retro_mmus_3554,
Oryctolagus cuniculus	ENSOCUG00000014043	ortholog_one2one	5 retrogenes	retro_ocun_1100, retro_ocun_1650, retro_ocun_1869, retro_ocun_334, retro_ocun_398,
Otolemur garnettii	ENSOGAG00000008754	possible_ortholog	11 retrogenes	retro_ogar_1214, retro_ogar_1334, retro_ogar_138, retro_ogar_1625, retro_ogar_1811, retro_ogar_2012, retro_ogar_2048, retro_ogar_2881, retro_ogar_301, retro_ogar_442, retro_ogar_718,
Ochotona princeps	ENSOPRG00000009256	possible_ortholog	5 retrogenes	retro_opri_1127, retro_opri_122, retro_opri_440, retro_opri_529, retro_opri_844,
Procavia capensis	ENSPCAG00000014950	possible_ortholog	2 retrogenes	retro_pcap_195, retro_pcap_25,
Pongo abelii	ENSPPYG00000014328	possible_ortholog	2 retrogenes	retro_pabe_2126, retro_pabe_44,
Pan troglodytes	ENSPTRG00000030046	ortholog_one2one	7 retrogenes	retro_ptro_1374, retro_ptro_1719, retro_ptro_2370, retro_ptro_2927, retro_ptro_404, retro_ptro_429, retro_ptro_907,
Rattus norvegicus	ENSRNOG00000049819	possible_ortholog	1 retrogene	retro_rnor_2913,
Sus scrofa	ENSSSCG00000011770	possible_ortholog	2 retrogenes	retro_sscr_651, retro_sscr_891,
Ictidomys tridecemlineatus	ENSSTOG00000011508	possible_ortholog	1 retrogene	retro_itri_552,
Tupaia belangeri	ENSTBEG00000015089	possible_ortholog	27 retrogenes	retro_tbel_1126, retro_tbel_1166, retro_tbel_1167, retro_tbel_1296, retro_tbel_1301, retro_tbel_1491, retro_tbel_1693, retro_tbel_1780, retro_tbel_2117, retro_tbel_2136, retro_tbel_2267, retro_tbel_2459, retro_tbel_266, retro_tbel_2830, retro_tbel_3233, retro_tbel_3303, retro_tbel_3556, retro_tbel_3716, retro_tbel_3814, retro_tbel_384, retro_tbel_3849, retro_tbel_3963, retro_tbel_4043, retro_tbel_42, retro_tbel_633, retro_tbel_833, retro_tbel_889,
Tarsius syrichta	ENSTSYG00000001611	possible_ortholog	3 retrogenes	retro_tsyr_112, retro_tsyr_174, retro_tsyr_312,
Tursiops truncatus	ENSTTRG00000014700	possible_ortholog	6 retrogenes	retro_ttru_1023, retro_ttru_1630, retro_ttru_1830, retro_ttru_662, retro_ttru_704, retro_ttru_962,
Vicugna pacos	ENSVPAG00000003387	possible_ortholog	1 retrogene	retro_vpac_533,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_eeur_48	82.50	100.00	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_eeur_74	85.00	100.00	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_eeur_94	89.66	100.00	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_eeur_221	88.03	100.00	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_eeur_230	81.03	100.00	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_eeur_309	98.28	100.00	Please wait, loading	Please wait, loading	Please wait, loading
7.	retro_eeur_455	83.82	58.62	Please wait, loading	Please wait, loading	Please wait, loading
8.	retro_eeur_511	72.27	98.28	Please wait, loading	Please wait, loading	Please wait, loading
9.	retro_eeur_596	55.00	68.10	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSEEUG00000006955 retrocopies

Parental gene:	DNAJC19, ENSEEUG00000006955
Aliases:	None
Description:	DnaJ (Hsp40) homolog, subfamily C, member 19 [Source:HGNC Symbol;Acc:30528]
Organism:	*Hedgehog (Erinaceus europaeus)*
Coordinates:	GeneScaffold_2458:75610..82637(-)

Parental gene:

DNAJC19, ENSEEUG00000006955